当前解析结果
SmilChr02G000703| 统一新 Gene ID | SmilChr02G000703 |
|---|---|
| 名称 | SmilChr02G000703 |
| 描述 | uncharacterized SmilChr02G000703 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 11234694 - 11243392 / - |
| NCBI Gene ID | LOC131007990 |
|---|---|
| GeneID | 131007990 |
| locus_tag | - |
| NCBI Name | LOC131007990 |
| 原始查询 | SmilChr02G000703 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=low |
| 产物 | hit=Os04g0191000; species=rice; confidence=low |
| Arabidopsis | ATMG00860- identity=61.8; qcov=0.054; evalue=7.52e-25; confidence=weak |
| Rice | Os04g0191000- identity=33.8; qcov=0.739; evalue=2.22e-177; confidence=low |
| GO | GO:0003676 (nucleic acid binding) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF08284 (RVP_2); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF19259 (Ty3_capsid) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007990 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057790880.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057790880.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057790880.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057790880.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057790880.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:11234717 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr2:11234729 |
GTC |
G |
2bp_deletion | frameshift_variant | 1 | C46 |
Chr2:11234729 |
GTC |
G |
2bp_deletion | CDS_variant | 1 | C46 |
Chr2:11234735 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B24,C76 |
Chr2:11234770 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B32,B33,B46,C60,C87 |
Chr2:11234773 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B127,B131,B45 |
Chr2:11234786 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A10,C2,C68,C71 |
Chr2:11234788 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B67,C1,C12,D11 |
Chr2:11234792 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B105 |
Chr2:11234792 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B105 |
Chr2:11234797 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B47,B63,B66 |
Chr2:11234813 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B12,B55,C17 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790880.1PF19259
Ty3_capsid 92-208 aa
PF08284
RVP_2 350-411 aa
PF00078
RVT_1 557-689 aa
PF17919
RT_RNaseH_2 746-817 aa
PF17917
RT_RNaseH 771-817 aa
PF17921
Integrase_H2C2 922-977 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790880.1 |
Pfam | PF19259 |
Ty3_capsid | Domain | 92 | 208 | 2.3e-10 | 40.9 | Ty3 transposon capsid-like protein |
XP_057790880.1 |
Pfam | PF08284 |
RVP_2 | Domain | 350 | 411 | 0.00017 | 22.1 | Retroviral aspartyl protease |
XP_057790880.1 |
Pfam | PF00078 |
RVT_1 | Domain | 557 | 689 | 2.8e-30 | 106.4 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057790880.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 746 | 817 | 9.4e-20 | 71.3 | RNase H-like domain found in reverse transcriptase |
XP_057790880.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 771 | 817 | 1.7e-11 | 44.9 | RNase H-like domain found in reverse transcriptase |
XP_057790880.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 922 | 977 | 1.6e-19 | 70.5 | Integrase zinc binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。