当前解析结果
SmilChr02G000731| 统一新 Gene ID | SmilChr02G000731 |
|---|---|
| 名称 | SmilChr02G000731 |
| 描述 | interactor of constitutive active ROPs 2, chloroplastic-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 11860362 - 11863701 / + |
| NCBI Gene ID | LOC131007997 |
|---|---|
| GeneID | 131007997 |
| locus_tag | - |
| NCBI Name | LOC131007997 |
| 原始查询 | SmilChr02G000731 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | interactor of constitutive active ROPs 2, chloroplastic-like |
| 产物 | interactor of constitutive active ROPs 2%2C chloroplastic-like |
| Arabidopsis | AT2G37080 (RIP2)ROP interactive partner 3 [Source:NCBI gene (formerly Entrezgene);Acc:818284] identity=39.5; qcov=0.714; evalue=5.94e-26; confidence=medium |
| Rice | Os05g0122600- identity=37.1; qcov=0.74; evalue=1.37e-20; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007997 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057790887.1 |
| 2 | Cytoskeleton | 细胞骨架 | 0.60000 | XP_057790887.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057790887.1 |
| 4 | Cell membrane | 细胞膜 | 0.20000 | XP_057790887.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057790887.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:11860368 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A16,C30 |
Chr2:11860741 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B69,C17,C82 |
Chr2:11860742 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
Chr2:11860748 |
C |
T |
EMS_canonical_SNV | stop_gained | 8 | B113,B32,B33,B67,C28,C63,C74,C9 |
Chr2:11860750 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B131,B140,B79,C19 |
Chr2:11861017 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C27,C83,D2 |
Chr2:11861533 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B137 |
Chr2:11861533 |
GA |
G |
1bp_deletion | CDS_variant | 1 | B137 |
Chr2:11861573 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B47,B49,C43,D6 |
Chr2:11861690 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B133,C16 |
Chr2:11861736 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C66 |
Chr2:11861776 |
C |
T |
EMS_canonical_SNV | stop_gained | 13 | B1,B107,B110,B113,B133,B14,B30,C13,C34,C40,C46,D1,D9 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。