Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000750`

染色体: Chr02 坐标: 12192296-12193687 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000750`
名称	SmilChr02G000750
描述	uncharacterized SmilChr02G000750
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	12192296 - 12193687 / `-`

ID 对照

NCBI Gene ID	`LOC131008004`
GeneID	`131008004`
locus_tag	`-`
NCBI Name	`LOC131008004`
原始查询	`SmilChr02G000750`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Arabidopsis/Rice homolog
描述	zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low
产物	zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low
Arabidopsis	`AT2G01050` (AT2G01050) zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629] identity=26.6; qcov=0.415; evalue=4.69e-20; confidence=low
Rice	`Os12g0156200` - identity=21.5; qcov=0.548; evalue=2.02e-08; confidence=weak
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131008004

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057790892.1`
2	Cytosol	细胞质基质	0.60000	`XP_057790892.1`
3	Nucleus	细胞核	0.40000	`XP_057790892.1`
4	Cytoplasmic granule	细胞质颗粒	0.40000	`XP_057790892.1`
5	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.20000	`XP_057790892.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:12192308`	`TGG`	`T`	2bp_deletion	frameshift_variant	104	A13,A15,A16,A21,A22,A3,A5,A6,A8,B1,B10,B101,B106,B107,B111,B112,B117,B12,B123,B124,B126,B128,B129,B130,B131,B139,B14,B17,B20,B23,B26,B28,B33,B34,B37,B38,B4,B40,B41,B43,B46,B51,B53,B54,B57,B58,B59,B61,B64,B66,B67,B68,B70,B71,B72,B74,B77,B8,B82,B83,B87,B89,B9,B90,B92,B95,B99,C12,C14,C15,C18,C21,C22,C23,C25,C28,C32,C33,C34,C36,C38,C39,C4,C40,C44,C47,C50,C51,C52,C53,C54,C64,C65,C67,C68,C72,C76,C80,C86,C87,C9,D2,D4,D6
`Chr2:12192316`	`TC`	`T`	1bp_deletion	frameshift_variant	3	A11,A25,B13
`Chr2:12192316`	`TC`	`T`	1bp_deletion	CDS_variant	3	A11,A25,B13
`Chr2:12192326`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B117,B23,B37,B80,C71
`Chr2:12192339`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A8,B12,C28
`Chr2:12192349`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A8,B12,C28
`Chr2:12192355`	`TAA`	`T`	2bp_deletion	frameshift_variant	3	B77,C18,C67
`Chr2:12192355`	`TAA`	`T`	2bp_deletion	CDS_variant	3	B77,C18,C67
`Chr2:12192368`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr2:12192385`	`TCG`	`T`	2bp_deletion	frameshift_variant	19	A8,B106,B107,B124,B135,B139,B17,B26,B40,B46,B68,B89,B98,B99,C25,C32,C38,C47,C48
`Chr2:12192393`	`TCA`	`T`	2bp_deletion	frameshift_variant	6	B114,B2,B48,C20,C58,C83
`Chr2:12192405`	`A`	`ACG`	2bp_insertion	frameshift_variant	3	A9,B23,D5

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057934909.1
ATGGACATGATGGAGCCCGCCGATGCCGCTTGTACGGCGGCCACCTCGCCGCAACCCAACAACCTTGTTCCTTCCTCTGTAGGAACTGCTAGTACTACTGAGAAAACAGCCGAACTGCCGTCGTTCCCAAGCAATGAAAAGCAGAAGAAAACCTATTCTGCTGTGGGAGACAAACCGAGATCAACACAAGAGATCAAAACTGAACTACAGAAAATCTGGAGCCTGCGGGAAGAATGGCAACTAATCCCTATGGGCAAGGG...

CDS

1 records

下载 CDS FASTA

LOC131008004
ATGGACATGATGGAGCCCGCCGATGCCGCTTGTACGGCGGCCACCTCGCCGCAACCCAACAACCTTGTTCCTTCCTCTGTAGGAACTGCTAGTACTACTGAGAAAACAGCCGAACTGCCGTCGTTCCCAAGCAATGAAAAGCAGAAGAAAACCTATTCTGCTGTGGGAGACAAACCGAGATCAACACAAGAGATCAAAACTGAACTACAGAAAATCTGGAGCCTGCGGGAAGAATGGCAACTAATCCCTATGGGCAAGGG...

Protein

1 records

下载 Protein FASTA

XP_057790892.1
MDMMEPADAACTAATSPQPNNLVPSSVGTASTTEKTAELPSFPSNEKQKKTYSAVGDKPRSTQEIKTELQKIWSLREEWQLIPMGKGYFTLKFANQIDKDIAKDKTVWDLAVGSLRIREWVRNFDPYKENSSLCQVWIRIYNMPVEYWHPEVFAAIGRTLGFPIKLDGASASKDVGSFARMLVEIDLSVPSIDSMTIDCDVMSFYVDFVYEQLPLYCTNCKITGHNLDKCKKSKPDNNKASKEPRGQVMGETTTGTEQDI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器