当前解析结果
SmilChr02G000765| 统一新 Gene ID | SmilChr02G000765 |
|---|---|
| 名称 | SmilChr02G000765 |
| 描述 | homeobox protein knotted-1-like LET6 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 12517283 - 12521789 / - |
| NCBI Gene ID | LOC131011244 |
|---|---|
| GeneID | 131011244 |
| locus_tag | - |
| NCBI Name | LOC131011244 |
| 原始查询 | SmilChr02G000765 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | homeobox protein knotted-1-like LET6 |
| 产物 | homeobox protein knotted-1-like LET6 |
| Arabidopsis | AT1G62360 (STM)KNOX/ELK homeobox transcription factor [Source:NCBI gene (formerly Entrezgene);Acc:842534] identity=80.5; qcov=0.695; evalue=1.71e-135; confidence=high |
| Rice | Os07g0129700 (OSH15)- identity=57; qcov=0.703; evalue=3.89e-87; confidence=high |
| GO | GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0003677 (DNA binding); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF00046 (Homeodomain); PF03789 (ELK); PF03790 (KNOX1); PF03791 (KNOX2); PF05920 (Homeobox_KN) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011244 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057795015.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057795015.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057795015.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057795015.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057795015.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:12517558 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B71,B88,B98,C62 |
Chr2:12517590 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A14,B119,B42,B43,C43 |
Chr2:12518172 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr2:12520528 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A1,A23,B70,B76,C55 |
Chr2:12520555 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr2:12520785 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B129,B91 |
Chr2:12520939 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | A22 |
Chr2:12520939 |
GC |
G |
1bp_deletion | CDS_variant | 1 | A22 |
Chr2:12521025 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr2:12521066 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C30 |
Chr2:12521077 |
T |
TTC |
2bp_insertion | frameshift_variant | 150 | A10,A11,A14,A16,A20,A22,A23,A3,A4,A5,A6,A7,A8,B10,B100,B104,B105,B108,B109,B11,B110,B111,B113,B115,B119,B12,B120,B121,B122,B125,B126,B127,B128,B129,B13,B131,B132,B134,B137,B138,B14,B140,B15,B19,B2,B20,B22,B23,B24,B25,B26,B27,B30,B31,B32,B33,B34,B37,B38,B39,B4,B40,B41,B42,B43,B45,B48,B49,B50,B52,B53,B55,B56,B57,B58,B60,B67,B68,B70,B71,B72,B74,B75,B78,B79,B8,B80,B81,B82,B83,B84,B86,B9,B90,B92,B93,B95,B96,B99,C1,C10,C14,C17,C19,C20,C21,C24,C25,C27,C28,C32,C33,C35,C36,C37,C38,C39,C40,C41,C42,C45,C47,C50,C52,C53,C54,C59,C6,C60,C64,C66,C68,C70,C73,C74,C75,C77,C78,C8,C81,C83,C85,C86,C87,C9,D10,D11,D5,D7,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057795015.1PF03790
KNOX1 125-162 aa
PF03791
KNOX2 175-221 aa
PF03789
ELK 259-280 aa
PF05920
Homeobox_KN 299-338 aa
PF00046
Homeodomain 306-339 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795015.1 |
Pfam | PF03790 |
KNOX1 | Family | 125 | 162 | 1.1e-18 | 67.4 | KNOX1 domain |
XP_057795015.1 |
Pfam | PF03791 |
KNOX2 | Family | 175 | 221 | 1.8e-21 | 76.1 | KNOX2 domain |
XP_057795015.1 |
Pfam | PF03789 |
ELK | Family | 259 | 280 | 3e-11 | 43.6 | ELK domain |
XP_057795015.1 |
Pfam | PF05920 |
Homeobox_KN | Family | 299 | 338 | 3.1e-19 | 69.3 | Homeobox KN domain |
XP_057795015.1 |
Pfam | PF00046 |
Homeodomain | Domain | 306 | 339 | 1.1e-06 | 29.1 | Homeodomain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。