Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000767`

染色体: Chr02 坐标: 12589035-12594752 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000767`
名称	SmilChr02G000767
描述	uncharacterized SmilChr02G000767
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	12589035 - 12594752 / `-`

ID 对照

NCBI Gene ID	`LOC131011247`
GeneID	`131011247`
locus_tag	`-`
NCBI Name	`LOC131011247`
原始查询	`SmilChr02G000767`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816351]; symbol=AT2G18360; hit=AT2G18360; species=arabidopsis; confidence=high
产物	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816351]; symbol=AT2G18360; hit=AT2G18360; species=arabidopsis; confidence=high
Arabidopsis	`AT2G18360` (AT2G18360) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816351] identity=67.3; qcov=1.01; evalue=2.46e-159; confidence=high
Rice	`Os01g0636400` - identity=59.5; qcov=1.09; evalue=6.28e-141; confidence=high
GO	-
KEGG	-
Pfam	PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6)
InterPro	-
eggNOG	-
NR	GeneID:131011247

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057795016.1`
2	Endoplasmic reticulum membrane	内质网膜	0.40000	`XP_057795016.1`
3	Lipid droplet	脂滴	0.20000	`XP_057795016.1`
4	Nucleus	细胞核	0.00000	`XP_057795016.1`
5	Chromosome	染色体	0.00000	`XP_057795016.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:12589233`	`C`	`CAT`	2bp_insertion	frameshift_variant	8	A10,B103,B118,B130,B139,B5,B97,C81
`Chr2:12589314`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B10,B135
`Chr2:12589341`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A22,B128,B58,C58
`Chr2:12589512`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C76,D8
`Chr2:12590090`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B124,B136
`Chr2:12590321`	`GTA`	`G`	2bp_deletion	frameshift_variant	14	A18,A23,A4,B15,B31,B35,B44,B47,B55,B63,C18,C63,C7,C9
`Chr2:12590981`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr2:12591006`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A16,C30

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795016.1

307 aa

154

307

Hydrolase_4

Abhydrolase_1

Abhydrolase_6

PF12146 Hydrolase_4 52-284 aa PF00561 Abhydrolase_1 53-158 aa PF12697 Abhydrolase_6 55-285 aa

XP_057795017.1

307 aa

154

307

Hydrolase_4

Abhydrolase_1

Abhydrolase_6

PF12146 Hydrolase_4 52-284 aa PF00561 Abhydrolase_1 53-158 aa PF12697 Abhydrolase_6 55-285 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795016.1`	Pfam	`PF12146`	Hydrolase_4	Domain	52	284	1.5e-07	31.7	Serine aminopeptidase, S33
`XP_057795016.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	53	158	4.4e-24	86.2	alpha/beta hydrolase fold
`XP_057795016.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	55	285	4.3e-14	54.4	Alpha/beta hydrolase family
`XP_057795017.1`	Pfam	`PF12146`	Hydrolase_4	Domain	52	284	1.5e-07	31.7	Serine aminopeptidase, S33
`XP_057795017.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	53	158	4.4e-24	86.2	alpha/beta hydrolase fold
`XP_057795017.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	55	285	4.3e-14	54.4	Alpha/beta hydrolase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057939033.1
AAGGACGATTTCGTGCAAGGCACAATGAATTTGGTGGCGTGAAAAGGATAAAAGAATTTTGGGCCCATTCCATAATGAAATTACTTCCACGGCTGTCAGCCGACAAGAGTATAAATCTCACGAGTATTTAAGATTAATTTTATTATTGGAAGATATCAAAATTAATAAGACGGTACTAATTAATTAAGTTATTTTTTAATAAAAATTTATTAATGACAAATTAATATATTTACATAAAAAAATTATTTTTAATTTTTTAA...

XM_057939034.1
CATGGCCTTAACTTTTGTAAAGCTTTTTTAACCTCCATATATTTTTATTTGGGCATAATCAAGTGTGGCGGTTCGTCGGCGGCGTAGCGGCGGCATCTCGTCCGCGGCGGGAAGCCATTTTCGTGTATATTAAGGTGGTTGTTGATTGTAGTTGGGTTCTTCTCAAAAATCTATTTGATAGCGAAACCTCACCGTTACTCTTCTTCACAGAAATTTGAAGGTAACCATTCAAATATATATTTCTGTCTCCAATTTTTTTT...

CDS

2 records

下载 CDS FASTA

LOC131011247
ATGGTGAACCTAGTAGCAGCTCAGAAGCCACTGCTACATGGGCTGATGAAGATGGCCGGCGTGATTCCTCACACCGTTGAAATCGAACCGGGCACCGTCATGAACATCTGGGTCCCTCGAGACACCCTCAAGACCAAACCCAAGACCACCACCAAACCAGTCGTGGTGCTCGTCCATGGCTTCGCCGGCGAGGGCATCGTCACCTGGCAATTTCAGGTGGGATCTTTGACGAAGAAGTACTCCGTCTACGTGCCCGACCT...

Protein

2 records

下载 Protein FASTA

XP_057795016.1
MVNLVAAQKPLLHGLMKMAGVIPHTVEIEPGTVMNIWVPRDTLKTKPKTTTKPVVVLVHGFAGEGIVTWQFQVGSLTKKYSVYVPDLLFFGGSFTDSPDRSPTFQAECLLKGLKKLGVERCTVVGFSYGGMVAFKMAELHPEMVDAMVISGSILAMTDSISNATLDELGFSSSSELLLPTSVKGCKALLKVAAYKNLWFPDRLHRDFLEVMFSNRKERAELLEGLVVSTKETNIPSFSQRIHLLWGEEDQIFKLELAQNM...

XP_057795017.1
MVNLVAAQKPLLHGLMKMAGVIPHTVEIEPGTVMNIWVPRDTLKTKPKTTTKPVVVLVHGFAGEGIVTWQFQVGSLTKKYSVYVPDLLFFGGSFTDSPDRSPTFQAECLLKGLKKLGVERCTVVGFSYGGMVAFKMAELHPEMVDAMVISGSILAMTDSISNATLDELGFSSSSELLLPTSVKGCKALLKVAAYKNLWFPDRLHRDFLEVMFSNRKERAELLEGLVVSTKETNIPSFSQRIHLLWGEEDQIFKLELAQNM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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