当前解析结果
SmilChr02G000772| 统一新 Gene ID | SmilChr02G000772 |
|---|---|
| 名称 | SmilChr02G000772 |
| 描述 | uncharacterized SmilChr02G000772 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 12678524 - 12680002 / - |
| NCBI Gene ID | LOC131008010 |
|---|---|
| GeneID | 131008010 |
| locus_tag | - |
| NCBI Name | LOC131008010 |
| 原始查询 | SmilChr02G000772 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0597300; species=rice; confidence=low |
| 产物 | hit=Os12g0597300; species=rice; confidence=low |
| Arabidopsis | AT1G06740 (MUG3)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=26.9; qcov=0.836; evalue=3.01e-43; confidence=low |
| Rice | Os12g0597300- identity=30.7; qcov=0.852; evalue=4.9e-48; confidence=low |
| GO | GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF04434 (SWIM); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008010 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057790897.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057790897.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057790897.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057790897.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057790897.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:12678549 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr2:12678589 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr2:12678609 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr2:12678623 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B110 |
Chr2:12678634 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C10,C33,C8 |
Chr2:12678637 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B95,C84 |
Chr2:12678646 |
G |
A |
EMS_canonical_SNV | stop_gained | 44 | A13,A14,A20,A3,B127,B129,B139,B23,B25,B30,B31,B32,B34,B42,B43,B48,B52,B54,B58,B63,B65,B70,B73,B75,B82,B83,B84,B86,B89,B9,C10,C13,C18,C22,C26,C28,C37,C44,C50,C54,C6,C86,C87,D3 |
Chr2:12678688 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B26,B5 |
Chr2:12678843 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B49,B68 |
Chr2:12678858 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C55 |
Chr2:12678885 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C1,C4 |
Chr2:12678898 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A15,B117,B40,C68,D2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790897.1PF00872
Transposase_mut 59-202 aa
PF10551
MULE 60-154 aa
PF04434
SWIM 305-335 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790897.1 |
Pfam | PF00872 |
Transposase_mut | Family | 59 | 202 | 2.8e-11 | 43.7 | Transposase, Mutator family |
XP_057790897.1 |
Pfam | PF10551 |
MULE | Domain | 60 | 154 | 5.1e-20 | 72.4 | MULE transposase domain |
XP_057790897.1 |
Pfam | PF04434 |
SWIM | Domain | 305 | 335 | 4.9e-08 | 33.0 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。