当前解析结果
SmilChr02G000780| 统一新 Gene ID | SmilChr02G000780 |
|---|---|
| 名称 | SmilChr02G000780 |
| 描述 | protein STRUBBELIG-RECEPTOR FAMILY 8 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 12795799 - 12802086 / + |
| NCBI Gene ID | LOC131011254 |
|---|---|
| GeneID | 131011254 |
| locus_tag | - |
| NCBI Name | LOC131011254 |
| 原始查询 | SmilChr02G000780 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein STRUBBELIG-RECEPTOR FAMILY 8 |
| 产物 | protein STRUBBELIG-RECEPTOR FAMILY 8 |
| Arabidopsis | AT4G22130 (SRF8)STRUBBELIG-receptor family 8 [Source:NCBI gene (formerly Entrezgene);Acc:828302] identity=67.1; qcov=0.978; evalue=0; confidence=high |
| Rice | Os02g0190500- identity=63.9; qcov=0.986; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011254 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057795022.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057795022.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057795022.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057795022.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057795022.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:12797311 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:12797759 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,B135 |
Chr2:12798025 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B95 |
Chr2:12799544 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr2:12799639 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A21,B76,C45 |
Chr2:12800297 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B71,B98,C13,C62 |
Chr2:12800596 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:12800616 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B71,B93,B98,C62,D2 |
Chr2:12801329 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B28,B54,B93,C15 |
Chr2:12801705 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | C37 |
Chr2:12801705 |
CA |
C |
1bp_deletion | CDS_variant | 1 | C37 |
Chr2:12801750 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,C56,C65 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057795022.1PF08263
LRRNT_2 33-72 aa
PF00560
LRR_1 100-119 aa
PF13855
LRR_8 121-181 aa
PF00560
LRR_1 122-144 aa
PF00560
LRR_1 171-192 aa
PF00560
LRR_1 217-237 aa
PF00069
Pkinase 412-683 aa
PF07714
PK_Tyr_Ser-Thr 414-685 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795022.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 33 | 72 | 2e-10 | 41.5 | Leucine rich repeat N-terminal domain |
XP_057795022.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 100 | 119 | 2.7e-11 | 42.0 | Leucine Rich Repeat |
XP_057795022.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 121 | 181 | 3e-09 | 37.2 | Leucine rich repeat |
XP_057795022.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 122 | 144 | 2.7e-11 | 42.0 | Leucine Rich Repeat |
XP_057795022.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 171 | 192 | 2.7e-11 | 42.0 | Leucine Rich Repeat |
XP_057795022.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 217 | 237 | 2.7e-11 | 42.0 | Leucine Rich Repeat |
XP_057795022.1 |
Pfam | PF00069 |
Pkinase | Domain | 412 | 683 | 4.7e-42 | 144.9 | Protein kinase domain |
XP_057795022.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 414 | 685 | 7.8e-44 | 150.6 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。