当前解析结果
SmilChr02G000794| 统一新 Gene ID | SmilChr02G000794 |
|---|---|
| 名称 | SmilChr02G000794 |
| 描述 | cell wall protein RBR3-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 13111159 - 13114865 / + |
| NCBI Gene ID | LOC131008017 |
|---|---|
| GeneID | 131008017 |
| locus_tag | - |
| NCBI Name | LOC131008017 |
| 原始查询 | SmilChr02G000794 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cell wall protein RBR3-like |
| 产物 | cell wall protein RBR3-like |
| Arabidopsis | AT1G75390 (bZIP44)basic leucine-zipper 44 [Source:NCBI gene (formerly Entrezgene);Acc:843875] identity=50; qcov=0.177; evalue=7.91e-11; confidence=weak |
| Rice | Os02g0132500 (OsbZIP14)- identity=50; qcov=0.185; evalue=1.15e-08; confidence=weak |
| GO | GO:0000976 (transcription cis-regulatory region binding); GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0045893 (positive regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008017 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057790903.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057790903.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057790903.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057790903.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057790903.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:13111177 |
G |
GT |
1bp_insertion | frameshift_variant | 6 | B126,B15,C13,C30,C54,C76 |
Chr2:13111180 |
A |
AG |
1bp_insertion | frameshift_variant | 3 | B108,B127,B140 |
Chr2:13111180 |
A |
AG |
1bp_insertion | CDS_variant | 3 | B108,B127,B140 |
Chr2:13111202 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B134,C30 |
Chr2:13111211 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A18,C36,C67,D11,D4 |
Chr2:13111216 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B98 |
Chr2:13111269 |
CAG |
C |
2bp_deletion | frameshift_variant | 6 | B126,B13,C13,C30,C54,C76 |
Chr2:13111282 |
A |
ACC |
2bp_insertion | frameshift_variant | 1 | C36 |
Chr2:13111282 |
A |
ACC |
2bp_insertion | CDS_variant | 1 | C36 |
Chr2:13111286 |
C |
CTT |
2bp_insertion | frameshift_variant | 25 | A16,B127,B136,B33,B34,B37,B38,B39,B51,B59,B62,B73,B77,B88,B91,B99,C28,C39,C54,C63,C67,C72,C86,C9,D7 |
Chr2:13111301 |
G |
GCT |
2bp_insertion | frameshift_variant | 2 | A18,B113 |
Chr2:13111301 |
G |
GCT |
2bp_insertion | CDS_variant | 2 | A18,B113 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。