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Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G000822

染色体: Chr02 坐标: 13837220-13849310 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G000822
名称SmilChr02G000822
描述uncharacterized SmilChr02G000822
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向13837220 - 13849310 / -

ID 对照

NCBI Gene IDLOC131011287
GeneID131011287
locus_tag-
NCBI NameLOC131011287
原始查询SmilChr02G000822

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述malonyl-CoA decarboxylase family protein [Source:NCBI gene (formerly Entrezgene);Acc:825752]; symbol=AT4G04320; hit=AT4G04320; species=arabidopsis; confidence=high
产物malonyl-CoA decarboxylase family protein [Source:NCBI gene (formerly Entrezgene);Acc:825752]; symbol=AT4G04320; hit=AT4G04320; species=arabidopsis; confidence=high
ArabidopsisAT4G04320 (AT4G04320)
malonyl-CoA decarboxylase family protein [Source:NCBI gene (formerly Entrezgene);Acc:825752]
identity=69.3; qcov=1; evalue=0; confidence=high
RiceOs09g0394100
-
identity=60.5; qcov=1.01; evalue=0; confidence=high
GOGO:0005759 (mitochondrial matrix); GO:0005782 (peroxisomal matrix); GO:0006085 (acetyl-CoA biosynthetic process); GO:0006633 (fatty acid biosynthetic process); GO:0046321 (positive regulation of fatty acid oxidation); GO:0050080 (malonyl-CoA decarboxylase activity); GO:2001294 (malonyl-CoA catabolic process)
KEGGsmil00410 (beta-Alanine metabolism - Salvia miltiorrhiza (redroot sage)); smil00640 (Propanoate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage))
PfamPF05292 (MCD); PF17408 (MCD_N)
InterPro-
eggNOG-
NRGeneID:131011287

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057795053.1
2 Cytoplasm 细胞质 1.00000 XP_057795058.1
3 Cytosol 细胞质基质 0.80000 XP_057795057.1
4 Mitochondrion matrix 线粒体基质 0.40000 XP_057795055.1
5 Peroxisome 过氧化物酶体 0.20000 XP_057795057.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:13837509 C T EMS_canonical_SNV CDS_variant 1 C65
Chr2:13837720 G A EMS_canonical_SNV CDS_variant 3 B50,B66,C8
Chr2:13837741 C T EMS_canonical_SNV CDS_variant 3 B71,B98,C62
Chr2:13837748 G A EMS_canonical_SNV CDS_variant 1 B84
Chr2:13839568 G A EMS_canonical_SNV CDS_variant 2 B131,C58
Chr2:13839574 C T EMS_canonical_SNV CDS_variant 3 B50,B66,C8
Chr2:13844362 G A EMS_canonical_SNV CDS_variant 1 B5
Chr2:13845269 G A EMS_canonical_SNV CDS_variant 3 B115,B66,C8
Chr2:13845918 C T EMS_canonical_SNV CDS_variant 1 B115
Chr2:13846634 G A EMS_canonical_SNV CDS_variant 1 B115
Chr2:13846917 C T EMS_canonical_SNV CDS_variant 4 B115,B50,B66,C8
Chr2:13847337 G A EMS_canonical_SNV CDS_variant 4 B127,B41,B93,C5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795053.1
541 aa
N
1
270
541
MCD_N
MCD
C
PF17408 MCD_N 167-228 aa PF05292 MCD 234-536 aa
XP_057795054.1
541 aa
N
1
270
541
MCD_N
MCD
C
PF17408 MCD_N 167-228 aa PF05292 MCD 234-536 aa
XP_057795055.1
522 aa
N
1
261
522
MCD_N
MCD
C
PF17408 MCD_N 148-209 aa PF05292 MCD 215-517 aa
XP_057795056.1
522 aa
N
1
261
522
MCD_N
MCD
C
PF17408 MCD_N 148-209 aa PF05292 MCD 215-517 aa
XP_057795057.1
494 aa
N
1
247
494
MCD_N
MCD
C
PF17408 MCD_N 120-181 aa PF05292 MCD 187-489 aa
XP_057795058.1
440 aa
N
1
220
440
MCD_N
MCD
C
PF17408 MCD_N 66-127 aa PF05292 MCD 133-435 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057795053.1 Pfam PF17408 MCD_N Domain 167 228 2.1e-10 41.3 Malonyl-CoA decarboxylase N-terminal domain
XP_057795053.1 Pfam PF05292 MCD Domain 234 536 8.5e-86 288.8 Malonyl-CoA decarboxylase C-terminal domain
XP_057795054.1 Pfam PF17408 MCD_N Domain 167 228 2.1e-10 41.3 Malonyl-CoA decarboxylase N-terminal domain
XP_057795054.1 Pfam PF05292 MCD Domain 234 536 8.5e-86 288.8 Malonyl-CoA decarboxylase C-terminal domain
XP_057795055.1 Pfam PF17408 MCD_N Domain 148 209 1.8e-10 41.5 Malonyl-CoA decarboxylase N-terminal domain
XP_057795055.1 Pfam PF05292 MCD Domain 215 517 7.7e-86 288.9 Malonyl-CoA decarboxylase C-terminal domain
XP_057795056.1 Pfam PF17408 MCD_N Domain 148 209 1.8e-10 41.5 Malonyl-CoA decarboxylase N-terminal domain
XP_057795056.1 Pfam PF05292 MCD Domain 215 517 7.7e-86 288.9 Malonyl-CoA decarboxylase C-terminal domain
XP_057795057.1 Pfam PF17408 MCD_N Domain 120 181 1.8e-10 41.5 Malonyl-CoA decarboxylase N-terminal domain
XP_057795057.1 Pfam PF05292 MCD Domain 187 489 6.5e-86 289.1 Malonyl-CoA decarboxylase C-terminal domain
XP_057795058.1 Pfam PF17408 MCD_N Domain 66 127 1.7e-10 41.6 Malonyl-CoA decarboxylase N-terminal domain
XP_057795058.1 Pfam PF05292 MCD Domain 133 435 5.2e-86 289.5 Malonyl-CoA decarboxylase C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA
XM_057939073.1
GGGCTTTCATTATATTGATTTGGGCCTTGAAAGTAATTTGCGCCACTGTCGAAGCCGCAGCACACACAACACACACCGACGAATTGCGATTGACGAGATTCCAGCTAAGGAAATCGTAATCAAGAATTTGAGGGCCGCCACCATCTTTTGTGATGAATAAAAAATAAAGTGGAAGATTCTTCTGGCAAAATAAATATATGAGTAAGAACAGAAAGGCTCTCTCCATTTTGATGCGTGCTAGAATGCGCCCGCTTTCCCCC...
XM_057939072.1
GATTTGGGCCTTGAAAGTAATTTGCGCCACTGTCGAAGCCGCAGCACACACAACACACACCGACGAATTGCGATTGACGAGATTCCAGCTAAGGAAATCGTAATCAAGAATTTGAGGGCCGCCACCATCTTTTGTGATGAATAAAAAATAAAGTGGAAGATTCTTCTGGCAAAATAAATATATGAGTAAGAACAGAAAGGCTCTCTCCATTTTGATGCGTGCTAGAATGCGCCCGCTTTCCCCCACCACCAACAGAATAA...

CDS

6 records

下载 CDS FASTA
LOC131011287
ATGAGTAAGAACAGAAAGGCTCTCTCCATTTTGATGCGTGCTAGAATGCGCCCGCTTTCCCCCACCACCAACAGAATAAATCAGATGCAATTCCCGCCAATCGATGGTGTTGGGAATGGCAGAGTTTCTACTTCTCAGGATGCCTCCGCCACCTTCCACACAGACTTTAAGAGAGTGCAACAGTCGATGCATGCTGCTATTTCTATGAACAAGACTGAGATTCTAGATGTTGCACTAGATGATTTTTCTGAGGGTTACTA...
LOC131011287
ATGAGTAAGAACAGAAAGGCTCTCTCCATTTTGATGCGTGCTAGAATGCGCCCGCTTTCCCCCACCACCAACAGAATAAATCAGATGCAATTCCCGCCAATCGATGGTGTTGGGAATGGCAGAGTTTCTACTTCTCAGGATGCCTCCGCCACCTTCCACACAGACTTTAAGAGAGTGCAACAGTCGATGCATGCTGCTATTTCTATGAACAAGACTGAGATTCTAGATGTTGCACTAGATGATTTTTCTGAGGGTTACTA...

Protein

6 records

下载 Protein FASTA
XP_057795053.1
MSKNRKALSILMRARMRPLSPTTFCLGSHGLLIAEFVCMNDQNRINQMQFPPIDGVGNGRVSTSQDASATFHTDFKRVQQSMHAAISMNKTEILDVALDDFSEGYYALPKENRRTLLLTLAREYDLNRKQVRDLMKQYLGLELPSSDKPVENPHVGEGSFSAFYRIERNLRESLKPMYEVLFERLNTHPGGLRFLSIMRADILSFLAEENIALLRALDSYLKEKLITWLSPANLQLHHITWDDSASLLEKIVAHEAVHPI...
XP_057795054.1
MSKNRKALSILMRARMRPLSPTTFCLGSHGLLIAEFVCMNDQNRINQMQFPPIDGVGNGRVSTSQDASATFHTDFKRVQQSMHAAISMNKTEILDVALDDFSEGYYALPKENRRTLLLTLAREYDLNRKQVRDLMKQYLGLELPSSDKPVENPHVGEGSFSAFYRIERNLRESLKPMYEVLFERLNTHPGGLRFLSIMRADILSFLAEENIALLRALDSYLKEKLITWLSPANLQLHHITWDDSASLLEKIVAHEAVHPI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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