当前解析结果
SmilChr02G000831| 统一新 Gene ID | SmilChr02G000831 |
|---|---|
| 名称 | SmilChr02G000831 |
| 描述 | uncharacterized SmilChr02G000831 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 14087237 - 14090162 / - |
| NCBI Gene ID | LOC131011296 |
|---|---|
| GeneID | 131011296 |
| locus_tag | - |
| NCBI Name | LOC131011296 |
| 原始查询 | SmilChr02G000831 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:817817]; symbol=AT2G32560; hit=AT2G32560; species=arabidopsis; confidence=weak |
| 产物 | F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:817817]; symbol=AT2G32560; hit=AT2G32560; species=arabidopsis; confidence=weak |
| Arabidopsis | AT2G32560 (AT2G32560)F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:817817] identity=70; qcov=0.254; evalue=1.25e-08; confidence=weak |
| Rice | Os01g0281000 (OsFbox006)- identity=69; qcov=0.246; evalue=2.97e-07; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011296 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.80000 | XP_057795060.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057795065.1 |
| 3 | Cytoplasm | 细胞质 | 0.60000 | XP_057795065.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057795062.1 |
| 5 | Lipid droplet | 脂滴 | 0.20000 | XP_057795061.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:14087381 |
AT |
A |
1bp_deletion | frameshift_variant | 100 | A10,A11,A14,A16,A2,A22,A3,A4,A5,A7,A8,A9,B10,B104,B106,B107,B108,B11,B120,B124,B125,B129,B13,B131,B133,B135,B138,B140,B15,B18,B21,B25,B27,B33,B37,B44,B46,B47,B48,B52,B53,B56,B57,B59,B6,B60,B64,B70,B71,B72,B76,B78,B79,B8,B80,B85,B9,B90,B95,B96,B99,C10,C11,C13,C14,C16,C17,C18,C21,C25,C27,C29,C3,C34,C37,C39,C4,C41,C42,C44,C58,C60,C61,C63,C67,C68,C69,C71,C73,C74,C76,C79,C80,C83,C84,C87,C9,D7,D8,D9 |
Chr2:14087411 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B23,B50 |
Chr2:14087412 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B119,D3 |
Chr2:14087435 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B119,B65,C11,C69,D3 |
Chr2:14087563 |
AT |
A |
1bp_deletion | frameshift_variant | 6 | A19,B130,B5,B73,C75,C79 |
Chr2:14087641 |
CA |
C |
1bp_deletion | frameshift_variant | 6 | A9,B105,B122,B26,C24,C68 |
Chr2:14087645 |
TG |
T |
1bp_deletion | frameshift_variant | 6 | A9,B105,B122,B26,C24,C68 |
Chr2:14087650 |
CA |
C |
1bp_deletion | frameshift_variant | 3 | B28,B70,C62 |
Chr2:14087650 |
CA |
C |
1bp_deletion | CDS_variant | 3 | B28,B70,C62 |
Chr2:14087664 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B71,C4,C71 |
Chr2:14087673 |
G |
A |
EMS_canonical_SNV | stop_gained | 12 | A11,A13,B60,B63,B80,B87,C15,C35,C37,C41,C51,C75 |
Chr2:14087685 |
CG |
C |
1bp_deletion | frameshift_variant | 3 | B55,C23,C31 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
7 records
下载 cDNA FASTA6 records
下载 CDS FASTA6 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。