Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000846`

染色体: Chr02 坐标: 14366159-14370181 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000846`
名称	SmilChr02G000846
描述	scarecrow-like protein 21
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	14366159 - 14370181 / `-`

ID 对照

NCBI Gene ID	`LOC131011312`
GeneID	`131011312`
locus_tag	`-`
NCBI Name	`LOC131011312`
原始查询	`SmilChr02G000846`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	scarecrow-like protein 21
产物	scarecrow-like protein 21
Arabidopsis	`AT4G17230` (SCL13) SCARECROW-like 13 [Source:NCBI gene (formerly Entrezgene);Acc:827435] identity=51.9; qcov=0.941; evalue=1.39e-176; confidence=high
Rice	`Os07g0583600` (CIGR2) - identity=50.2; qcov=0.996; evalue=6.17e-164; confidence=high
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0043565 (sequence-specific DNA binding)
KEGG	-
Pfam	PF03514 (GRAS)
InterPro	-
eggNOG	-
NR	GeneID:131011312

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057795072.1`
2	Cytoplasm	细胞质	0.40000	`XP_057795072.1`
3	Cytosol	细胞质基质	0.40000	`XP_057795072.1`
4	Chromosome	染色体	0.00000	`XP_057795072.1`
5	Centromere	着丝粒	0.00000	`XP_057795072.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:14366424`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:14366450`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr2:14366508`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A13,C1,C86
`Chr2:14366786`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C70
`Chr2:14366864`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B115
`Chr2:14366996`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr2:14367105`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B115,B31
`Chr2:14367237`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B34
`Chr2:14367401`	`CTG`	`C`	2bp_deletion	frameshift_variant	4	B23,B4,C44,D10
`Chr2:14367401`	`CTG`	`C`	2bp_deletion	CDS_variant	4	B23,B4,C44,D10
`Chr2:14367405`	`T`	`TCA`	2bp_insertion	frameshift_variant	4	B23,B4,C44,D10
`Chr2:14367405`	`T`	`TCA`	2bp_insertion	CDS_variant	4	B23,B4,C44,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795072.1

533 aa

266

533

GRAS

PF03514 GRAS 152-532 aa

XP_057795073.1

526 aa

263

526

GRAS

PF03514 GRAS 145-525 aa

XP_057795074.1

526 aa

263

526

GRAS

PF03514 GRAS 145-525 aa

XP_057795075.1

526 aa

263

526

GRAS

PF03514 GRAS 145-525 aa

XP_057795076.1

526 aa

263

526

GRAS

PF03514 GRAS 145-525 aa

XP_057795077.1

526 aa

263

526

GRAS

PF03514 GRAS 145-525 aa

XP_057795078.1

526 aa

263

526

GRAS

PF03514 GRAS 145-525 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795072.1`	Pfam	`PF03514`	GRAS	Family	152	532	1.7e-121	406.4	GRAS domain family
`XP_057795073.1`	Pfam	`PF03514`	GRAS	Family	145	525	1.8e-121	406.3	GRAS domain family
`XP_057795074.1`	Pfam	`PF03514`	GRAS	Family	145	525	1.8e-121	406.3	GRAS domain family
`XP_057795075.1`	Pfam	`PF03514`	GRAS	Family	145	525	1.8e-121	406.3	GRAS domain family
`XP_057795076.1`	Pfam	`PF03514`	GRAS	Family	145	525	1.8e-121	406.3	GRAS domain family
`XP_057795077.1`	Pfam	`PF03514`	GRAS	Family	145	525	1.8e-121	406.3	GRAS domain family
`XP_057795078.1`	Pfam	`PF03514`	GRAS	Family	145	525	1.8e-121	406.3	GRAS domain family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057939090.1
TCCTAAAAAGATATCCCGACTATTTTATGAAATGCACACCTGTGAAAATATGCTACTGTGTTAAAACGTTTCTAGTCTACGTCGCTGGGGCTTTTACGTAGTAACTTCTCTTCTCTCTCTAAACAATAAAACAATGGAGTCTATTAGAAATAAGACGCGCTTTCCTCTCTTCAATTTCAGATAGTTTGACTCCAACGCACGACAAAATCTACTCTTTCTCTCTCTACCTGTGTTTCACGATTCATAAATCAATAACAACA...

XM_057939092.1
CCTGTGAAAATATGCTACTGTGTTAAAACGTTTCTAGTCTACGTCGCTGGGGCTTTTACGTAGTAACTTCTCTTCTCTCTCTAAACAATAAAACAATGGAGTCTATTAGAAATAAGACGCGCTTTCCTCTCTTCAATTTCAGATAGTTTGACTCCAACGCACGACAAAATCTACTCTTTCTCTCTCTACCTGTGTTTCACGATTCATAAATCAATAACAACAATTCCATAGTTTTTATCATAGCCTTTGTAGTTGTTTGT...

CDS

7 records

下载 CDS FASTA

LOC131011312
ATGTTCTGCCTACGCAATCTCCTCACTGCATCCCAGGAAGCTCTAGCATGTTCAAGTACTCATAATTCTCACCTTCTTCTGCCTAGTAAAAGCCAGGGTGCCGAACTTTCTTTTCAGGCTTATGCTGAGCAATTCTACACTCTTGAGTCTACACCAGTTACTGATTATGCTGTCTTAAGTTCACCTACAGCTGCGAGCGTCTCTTCCAATAAGAGTCCCTTTTCTCCGCAACTTTCTCATTTTTATGTGTCAGACGTCCA...

LOC131011312
ATGCAGGCATCCCAGGAAGCTCTAGCATGTTCAAGTACTCATAATTCTCACCTTCTTCTGCCTAGTAAAAGCCAGGGTGCCGAACTTTCTTTTCAGGCTTATGCTGAGCAATTCTACACTCTTGAGTCTACACCAGTTACTGATTATGCTGTCTTAAGTTCACCTACAGCTGCGAGCGTCTCTTCCAATAAGAGTCCCTTTTCTCCGCAACTTTCTCATTTTTATGTGTCAGACGTCCATCACTCATCGGATAATAGTTC...

Protein

7 records

下载 Protein FASTA

XP_057795072.1
MFCLRNLLTASQEALACSSTHNSHLLLPSKSQGAELSFQAYAEQFYTLESTPVTDYAVLSSPTAASVSSNKSPFSPQLSHFYVSDVHHSSDNSSSLNGSFEADDENNWMQSLWMLRNEFMEPECGSVTDESVQPGYGTRYHRIVEMAPNMDLKQLLIACAEIVSEADIVPFSERKVAASAAETVMDIIQGRVSVSGDPLQRLGAYILEALRARLLLSGSLIFKKLKCNEPSGPELMSHMQLLSQICPYYRFAYTSATAVI...

XP_057795073.1
MQASQEALACSSTHNSHLLLPSKSQGAELSFQAYAEQFYTLESTPVTDYAVLSSPTAASVSSNKSPFSPQLSHFYVSDVHHSSDNSSSLNGSFEADDENNWMQSLWMLRNEFMEPECGSVTDESVQPGYGTRYHRIVEMAPNMDLKQLLIACAEIVSEADIVPFSERKVAASAAETVMDIIQGRVSVSGDPLQRLGAYILEALRARLLLSGSLIFKKLKCNEPSGPELMSHMQLLSQICPYYRFAYTSATAVILEAMQNE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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