Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000849`

染色体: Chr02 坐标: 14414925-14418249 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000849`
名称	SmilChr02G000849
描述	OBERON-like protein
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	14414925 - 14418249 / `+`

ID 对照

NCBI Gene ID	`LOC131011314`
GeneID	`131011314`
locus_tag	`-`
NCBI Name	`LOC131011314`
原始查询	`SmilChr02G000849`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	OBERON-like protein
产物	OBERON-like protein
Arabidopsis	`AT5G48160` (OBE2) potyvirus VPg interacting protein (DUF1423) [Source:NCBI gene (formerly Entrezgene);Acc:834868] identity=65.2; qcov=1; evalue=0; confidence=high
Rice	`Os12g0514400` - identity=60.8; qcov=1.08; evalue=0; confidence=high
GO	GO:0005634 (nucleus)
KEGG	-
Pfam	PF07227 (PHD_Oberon); PF16312 (Oberon_cc)
InterPro	-
eggNOG	-
NR	GeneID:131011314

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057795079.1`
2	Chromosome	染色体	0.00000	`XP_057795079.1`
3	Centromere	着丝粒	0.00000	`XP_057795079.1`
4	Chromatin	染色质	0.00000	`XP_057795079.1`
5	Telomere	端粒	0.00000	`XP_057795079.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:14415856`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B127
`Chr2:14416034`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B50,B66
`Chr2:14416167`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	B50,B66
`Chr2:14416167`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B50,B66
`Chr2:14416298`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B83
`Chr2:14416403`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B23,B4,C44
`Chr2:14416429`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr2:14416439`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:14416445`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr2:14416450`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr2:14416525`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr2:14416962`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B73

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795079.1

575 aa

288

575

PHD_Oberon

Oberon_cc

PF07227 PHD_Oberon 213-336 aa PF16312 Oberon_cc 429-562 aa

XP_057795080.1

575 aa

288

575

PHD_Oberon

Oberon_cc

PF07227 PHD_Oberon 213-336 aa PF16312 Oberon_cc 429-562 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795079.1`	Pfam	`PF07227`	PHD_Oberon	Family	213	336	4.5e-40	137.2	PHD - plant homeodomain finger protein
`XP_057795079.1`	Pfam	`PF16312`	Oberon_cc	Coiled-coil	429	562	7.3e-48	162.5	Coiled-coil region of Oberon
`XP_057795080.1`	Pfam	`PF07227`	PHD_Oberon	Family	213	336	4.5e-40	137.2	PHD - plant homeodomain finger protein
`XP_057795080.1`	Pfam	`PF16312`	Oberon_cc	Coiled-coil	429	562	7.3e-48	162.5	Coiled-coil region of Oberon

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057939097.1
GGAATGGAATAAATGGTTTTGGGAGGAATGTAAAATGTAAAACGACTTTAGTGTGGTGCGTAGACAGCTTCCGAGAAGGAAGAATCCGAGTCGGAGTGAACAAAAGTCAAAGGCGCAGAAACAGTAAAAGCAGGCAACGGTGGGTCCCACCATCAGCTGACGACCGTTAACCTCCCAAAGCGGTCATAGCAAGTCTCCTAATTTGTTGAACATCGATCGACTTTCCACTGCTCAAAGAGGTAAACCCAGAAGACTTCGAA...

XM_057939096.1
TAGTGTGGTGCGTAGACAGCTTCCGAGAAGGAAGAATCCGAGTCGGAGTGAACAAAAGTCAAAGGCGCAGAAACAGTAAAAGCAGGCAACGGTGGGTCCCACCATCAGCTGACGACCGTTAACCTCCCAAAGCGGTCATAGCAAGTCTCCTAATTTGTTGAACATCGATCGACTTTCCACTGCTCAAAGAGGTAAACCCAGAAGACTTCGAAGCTAGCAATTCCCCCAACTGCTCTGGGGCGGGCTAGGGTTTCTGAATC...

CDS

2 records

下载 CDS FASTA

LOC131011314
ATGGGGACACCGTCTGGATCTCACTTCAACAATCAATCCTCGATGTTGCCTCCTCGTCAACAACCTCGCCCTGGTGGTGGGGGGCTGCAGACCTCCCTGTCCTTAGTTTCAGCAGATGCGTGTGGATCTCCAAATCTTGAGCGCGGCTCGAATTCTGATCAGGTGCATGAATCTCCATCAGAAAGTGCCAGTTCACGAGAAACCTGGCCCACAGCTGATGCTTTAGTAACAAAGAAATTGGAGAAGGAGAAAGAGAGAGA...

Protein

2 records

下载 Protein FASTA

XP_057795079.1
MGTPSGSHFNNQSSMLPPRQQPRPGGGGLQTSLSLVSADACGSPNLERGSNSDQVHESPSESASSRETWPTADALVTKKLEKEKERENGFAEHSVVRHFSSSDKMSLRDVARERVDIVAEKMQNLPDKYLDKFKNELRTFLEGLGGSQQREEFLFLQKLVQSRGDLTEQTLVMAHRVQLEILVAIKTGIQAFLHPSVSLSQASLIDIFLYKRCRNIACGSALPAEDCICELCAKRNGFCNLCMCTICNKFDFEVNTCRWI...

XP_057795080.1
MGTPSGSHFNNQSSMLPPRQQPRPGGGGLQTSLSLVSADACGSPNLERGSNSDQVHESPSESASSRETWPTADALVTKKLEKEKERENGFAEHSVVRHFSSSDKMSLRDVARERVDIVAEKMQNLPDKYLDKFKNELRTFLEGLGGSQQREEFLFLQKLVQSRGDLTEQTLVMAHRVQLEILVAIKTGIQAFLHPSVSLSQASLIDIFLYKRCRNIACGSALPAEDCICELCAKRNGFCNLCMCTICNKFDFEVNTCRWI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器