当前解析结果
SmilChr02G000857| 统一新 Gene ID | SmilChr02G000857 |
|---|---|
| 名称 | SmilChr02G000857 |
| 描述 | uncharacterized SmilChr02G000857 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 14637642 - 14638544 / - |
| NCBI Gene ID | LOC131008031 |
|---|---|
| GeneID | 131008031 |
| locus_tag | - |
| NCBI Name | LOC131008031 |
| 原始查询 | SmilChr02G000857 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=low |
| 产物 | hit=Os06g0484800; species=rice; confidence=low |
| Arabidopsis | AT1G43760 (AT1G43760)DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968] identity=33.9; qcov=0.847; evalue=2.35e-33; confidence=low |
| Rice | Os06g0484800- identity=30.8; qcov=0.963; evalue=5.13e-40; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008031 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057790918.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057790918.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057790918.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057790918.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057790918.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:14637649 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B48 |
Chr2:14637655 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B110,C12,C18 |
Chr2:14637675 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr2:14637703 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B113,B74 |
Chr2:14637707 |
G |
A |
EMS_canonical_SNV | stop_gained | 9 | B23,B26,B4,B48,B57,B7,C44,C86,D3 |
Chr2:14637728 |
G |
A |
EMS_canonical_SNV | stop_gained | 25 | A19,B115,B136,B18,B19,B21,B26,B29,B31,B59,B62,B65,B84,B89,B94,C10,C13,C16,C29,C56,C61,C84,D2,D6,D9 |
Chr2:14637734 |
G |
A |
EMS_canonical_SNV | stop_gained | 39 | A19,A2,A21,A25,A3,A5,B1,B113,B119,B130,B134,B16,B22,B28,B4,B44,B5,B51,B57,B62,B71,B85,B9,B94,C11,C18,C23,C26,C30,C31,C38,C47,C48,C67,C69,C82,C83,C85,D5 |
Chr2:14637735 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr2:14637741 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B23,B4,B89,C44,D3 |
Chr2:14637744 |
GT |
G |
1bp_deletion | frameshift_variant | 2 | B15,B53 |
Chr2:14637744 |
GT |
G |
1bp_deletion | CDS_variant | 2 | B15,B53 |
Chr2:14637764 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。