Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000879`

染色体: Chr02 坐标: 15140088-15159501 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000879`
名称	SmilChr02G000879
描述	nuclear-pore anchor
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	15140088 - 15159501 / `-`

ID 对照

NCBI Gene ID	`LOC131011330`
GeneID	`131011330`
locus_tag	`-`
NCBI Name	`LOC131011330`
原始查询	`SmilChr02G000879`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	nuclear-pore anchor
产物	nuclear-pore anchor
Arabidopsis	`AT1G79280` (NUA) nuclear pore anchor [Source:NCBI gene (formerly Entrezgene);Acc:844268] identity=47.8; qcov=1.03; evalue=0; confidence=high
Rice	`Os02g0741500` - identity=42.3; qcov=1.04; evalue=0; confidence=medium
GO	GO:0005643 (nuclear pore); GO:0006406 (mRNA export from nucleus); GO:0006606 (protein import into nucleus); GO:0017056 (structural constituent of nuclear pore)
KEGG	smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage))
Pfam	PF07926 (TPR_MLP1_2); PF25481 (Nucleoprot-TPR); PF25785 (TPR)
InterPro	-
eggNOG	-
NR	GeneID:131011330

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus membrane	核膜	0.80000	`XP_057795095.1`
2	Nucleus	细胞核	0.60000	`XP_057795095.1`
3	Chromosome	染色体	0.20000	`XP_057795095.1`
4	Nuclear pore complex	核孔复合体	0.20000	`XP_057795095.1`
5	Phragmoplast	Phragmoplast	0.20000	`XP_057795095.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:15140540`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C3
`Chr2:15140552`	`T`	`TG`	1bp_insertion	frameshift_variant	1	C3
`Chr2:15140552`	`T`	`TG`	1bp_insertion	CDS_variant	1	C3
`Chr2:15140641`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A1,A7,C59,C81,D11
`Chr2:15140812`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B93,C5,D11
`Chr2:15140880`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A1,A7,C59,C81
`Chr2:15140890`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B131,B42,B43,C50
`Chr2:15140902`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B108,B114,B117,C23
`Chr2:15141061`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B117
`Chr2:15141061`	`TG`	`T`	1bp_deletion	CDS_variant	1	B117
`Chr2:15141171`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B131,B42,B43,C50
`Chr2:15141179`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B49

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795095.1

2046 aa

1023

2046

Nucleoprot-TPR

TPR

TPR_MLP1_2

PF25481 Nucleoprot-TPR 170-249 aa PF25785 TPR 491-598 aa PF07926 TPR_MLP1_2 1040-1167 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795095.1`	Pfam	`PF25481`	Nucleoprot-TPR	Domain	170	249	6.3e-23	81.3	Nucleoprotein TPR-like domain
`XP_057795095.1`	Pfam	`PF25785`	TPR	Domain	491	598	4.5e-27	95.3	Nucleoprotein TPR-like domain
`XP_057795095.1`	Pfam	`PF07926`	TPR_MLP1_2	Coiled-coil	1040	1167	3.5e-21	76.3	TPR/MLP1/MLP2-like protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057939112.1
AAAGTTTAATAGTAGTGCCAGATGAATTTTAACTTTGGAGCTTGGGAAAAATAAATTCTCACGAAATTCGAACGGTTCTGTGTATTGTGTGAAGCGCTTCAAAAATCAGCATCCCTCCGTTTTCCAGCATTCCCATAAAACGCACGCATCCTCTATAATTGATTTTTAACTCTAGGGTTTTTCCATCGTTGATTCTCTGTCTGAATGAAATACAAATCTGAAGGAATTCCTGTTTGAATCGAAGAATAAGGAAGGAGGTG...

CDS

1 records

下载 CDS FASTA

LOC131011330
ATGCCGCTTTTCGTATCGGACGAAGAATTCCAGCTGTGCTCGGAAGATGCGGCGCTTTTGGCGGAGAAGGCGGACGATTTCATCCGTGGACTGTACAATCAAATAGAGACGGTGAAGGCGGAGGCCGACGCAGCCTCCATAACTCTCGAGCAGACGTGCTCTCTCAACGAACAAAAATACGTTTCCCTTTCCGCGGAGTACTCCTCTCTCCAGCTACAGAACTCCGAGATAAATGCTTTGCTTGAACAGCGCGATGCTGA...

Protein

1 records

下载 Protein FASTA

XP_057795095.1
MPLFVSDEEFQLCSEDAALLAEKADDFIRGLYNQIETVKAEADAASITLEQTCSLNEQKYVSLSAEYSSLQLQNSEINALLEQRDAEIAELKVEKQQFLLQSIEKDGELERLMREASELHRSKRQLMELVEQRDLEINEKNATIKSYLDKIVNLTENAASKDARVRDLESELGRLHATSDRFLQEKELLERHNSWLNEELTAKVNNLIQVRKEYAEFEADMSGKLADVEQKLKESANSLKFHKDRVRELEEKLASMEREL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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