当前解析结果
SmilChr02G000880| 统一新 Gene ID | SmilChr02G000880 |
|---|---|
| 名称 | SmilChr02G000880 |
| 描述 | uncharacterized SmilChr02G000880 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 15166531 - 15169074 / + |
| NCBI Gene ID | LOC131008041 |
|---|---|
| GeneID | 131008041 |
| locus_tag | - |
| NCBI Name | LOC131008041 |
| 原始查询 | SmilChr02G000880 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=low |
| 产物 | hit=Os08g0202300; species=rice; confidence=low |
| Arabidopsis | ATMG00860- identity=23.7; qcov=0.179; evalue=1.47e-06; confidence=weak |
| Rice | Os08g0202300- identity=30.9; qcov=0.447; evalue=2.47e-57; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008041 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057790927.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057790927.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057790927.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057790927.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057790927.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:15166562 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B123,C36,C68 |
Chr2:15166566 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A4,B50,B59,C12,C81 |
Chr2:15166568 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr2:15166579 |
C |
T |
EMS_canonical_SNV | stop_gained | 8 | B47,B50,B96,C21,C36,C39,C76,D4 |
Chr2:15166594 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C24,D10 |
Chr2:15166601 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr2:15166626 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B14,B71,C62,C86 |
Chr2:15166627 |
GAA |
G |
2bp_deletion | frameshift_variant | 2 | C11,D10 |
Chr2:15166627 |
GAA |
G |
2bp_deletion | CDS_variant | 2 | C11,D10 |
Chr2:15166630 |
G |
GGA |
2bp_insertion | frameshift_variant | 2 | C11,D10 |
Chr2:15166630 |
G |
GGA |
2bp_insertion | CDS_variant | 2 | C11,D10 |
Chr2:15166634 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B122,C65,C77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790927.1PF00078
RVT_1 370-529 aa
PF17919
RT_RNaseH_2 592-690 aa
PF17917
RT_RNaseH 620-719 aa
PF13456
RVT_3 755-846 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790927.1 |
Pfam | PF00078 |
RVT_1 | Domain | 370 | 529 | 1.6e-32 | 113.7 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057790927.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 592 | 690 | 3.7e-19 | 69.4 | RNase H-like domain found in reverse transcriptase |
XP_057790927.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 620 | 719 | 9.3e-15 | 55.4 | RNase H-like domain found in reverse transcriptase |
XP_057790927.1 |
Pfam | PF13456 |
RVT_3 | Domain | 755 | 846 | 2.8e-06 | 28.0 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。