Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000892`

染色体: Chr02 坐标: 15356574-15358136 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000892`
名称	SmilChr02G000892
描述	uncharacterized SmilChr02G000892
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	15356574 - 15358136 / `+`

ID 对照

NCBI Gene ID	`LOC131011339`
GeneID	`131011339`
locus_tag	`-`
NCBI Name	`LOC131011339`
原始查询	`SmilChr02G000892`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:836619]; symbol=AT5G64950; hit=AT5G64950; species=arabidopsis; confidence=low
产物	Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:836619]; symbol=AT5G64950; hit=AT5G64950; species=arabidopsis; confidence=low
Arabidopsis	`AT5G64950` (AT5G64950) Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:836619] identity=27.7; qcov=0.934; evalue=1.09e-38; confidence=low
Rice	`Os02g0749800` - identity=29.2; qcov=0.794; evalue=1.71e-34; confidence=low
GO	GO:0003690 (double-stranded DNA binding); GO:0006355 (regulation of DNA-templated transcription); GO:0009507 (chloroplast); GO:0009658 (chloroplast organization)
KEGG	-
Pfam	PF02536 (mTERF)
InterPro	-
eggNOG	-
NR	GeneID:131011339

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057795108.1`
2	Nucleus	细胞核	0.00000	`XP_057795108.1`
3	Chromosome	染色体	0.00000	`XP_057795108.1`
4	Centromere	着丝粒	0.00000	`XP_057795108.1`
5	Chromatin	染色质	0.00000	`XP_057795108.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:15356884`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B33,B46,B82,C60
`Chr2:15357006`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B3
`Chr2:15357093`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B31,B57
`Chr2:15357099`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr2:15357100`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B31,B57
`Chr2:15357135`	`TAA`	`T`	2bp_deletion	frameshift_variant	37	A25,A6,B105,B118,B123,B131,B138,B27,B4,B42,B43,B44,B45,B46,B5,B62,B89,B90,B92,B93,C11,C12,C18,C21,C36,C43,C44,C48,C58,C60,C67,C69,C7,C73,C80,C87,D10
`Chr2:15357140`	`G`	`GGA`	2bp_insertion	frameshift_variant	36	A25,A6,B105,B118,B123,B131,B138,B27,B4,B42,B43,B44,B45,B46,B5,B62,B89,B90,B92,B93,C11,C12,C18,C21,C36,C43,C44,C58,C60,C67,C69,C7,C73,C80,C87,D10
`Chr2:15357142`	`TTG`	`T`	2bp_deletion	frameshift_variant	49	A2,A3,B106,B120,B122,B13,B131,B133,B136,B137,B140,B15,B16,B2,B29,B33,B34,B39,B43,B61,B66,B68,B70,B71,B78,B84,B91,B92,C15,C2,C29,C31,C39,C42,C45,C46,C47,C48,C63,C66,C69,C72,C85,C86,D1,D10,D11,D4,D9
`Chr2:15357150`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr2:15357187`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B57,C64
`Chr2:15357257`	`CTT`	`*`	2bp_deletion	CDS_variant	5	B122,C39,C48,C72,C85
`Chr2:15357270`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B107,B140

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795108.1

379 aa

190

379

mTERF

PF02536 mTERF 41-173 aa PF02536 mTERF 112-224 aa PF02536 mTERF 249-354 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795108.1`	Pfam	`PF02536`	mTERF	Family	41	173	2e-38	132.8	mTERF
`XP_057795108.1`	Pfam	`PF02536`	mTERF	Family	112	224	2e-38	132.8	mTERF
`XP_057795108.1`	Pfam	`PF02536`	mTERF	Family	249	354	2e-38	132.8	mTERF

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057939125.1
GGAGGTTGTATGGAGAGAATTGGGGGCCATGAATAAAATCACCCTTCATTAAAAAAATAAAGAAATTGAAAGTAATATTTCCTCCCTCAGTCACTACAACGGAGATGGAGATGGCCATGGCGATGGTGGAGAAACCCTCAATCGAGAAACTTTGAATCGTTCGATTTCGCAGGCAAGTTATTTCCATATCCCGACACAATTGATTCTTCTCGTGTATTATCGAATTTTCTCCACTATGATTGCAATGGCACTCAGGAATC...

CDS

1 records

下载 CDS FASTA

LOC131011339
ATGATTGCAATGGCACTCAGGAATCTTTCCTGTTTATGTTTGAGCCCTAATTCATTTATCTGCAACCCCAATGTTCTCTCAATCCACTTTTTTTCGACTGCGAGAGCCAAAAGACTAATAATCCCTTCCCCTGAAATTTACGATATGCTGCTCCATAAACACCAATTTTCTCCTGAATTGGCTGCACTTGCTTCATCGCGCTTACCTAAATTTAGAAGCCCCAAAAGAGCTGATTCAGTACTCTCATTCCTCAAAGAGAA...

Protein

1 records

下载 Protein FASTA

XP_057795108.1
MIAMALRNLSCLCLSPNSFICNPNVLSIHFFSTARAKRLIIPSPEIYDMLLHKHQFSPELAALASSRLPKFRSPKRADSVLSFLKENSFTTTQLQKLVIYNPRILGFTIKSLESRFKVFQDLGLSSEEIAKIISSYQVILHSCMASKIIPSLSMLKALLGSNEEVARLLKKCAWFLRSDLEKTLMPNVEILKSCSIPMERILQFLYTRPRCFLVRPDIMRKSVDRAVEYGISRTSTGFIHALGVFSSTSEGMWDVKLETL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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