当前解析结果
SmilChr02G000902| 统一新 Gene ID | SmilChr02G000902 |
|---|---|
| 名称 | SmilChr02G000902 |
| 描述 | zeatin O-xylosyltransferase-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 15482008 - 15483615 / - |
| NCBI Gene ID | LOC131011348 |
|---|---|
| GeneID | 131011348 |
| locus_tag | - |
| NCBI Name | LOC131011348 |
| 原始查询 | SmilChr02G000902 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zeatin O-xylosyltransferase-like |
| 产物 | zeatin O-xylosyltransferase-like |
| Arabidopsis | AT2G15490 (UGT73B4)UDP-glycosyltransferase 73B4 [Source:NCBI gene (formerly Entrezgene);Acc:816041] identity=26.9; qcov=1.11; evalue=2.69e-50; confidence=low |
| Rice | Os04g0565400 (CZOGT3)- identity=41; qcov=1.05; evalue=6.23e-114; confidence=medium |
| GO | GO:0008194 (UDP-glycosyltransferase activity) |
| KEGG | smil00908 (Zeatin biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00201 (UDPGT); PF26168 (Glyco_transf_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011348 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057795120.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057795120.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057795120.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057795120.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057795120.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:15482235 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr2:15482270 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B83,C19 |
Chr2:15482282 |
ACC |
A |
2bp_deletion | frameshift_variant | 1 | B83 |
Chr2:15482282 |
ACC |
A |
2bp_deletion | CDS_variant | 1 | B83 |
Chr2:15482319 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C19,C40 |
Chr2:15482355 |
TC |
T |
1bp_deletion | frameshift_variant | 22 | A13,A22,A23,A6,B112,B19,B27,B28,B37,B50,B67,B83,B93,C15,C16,C19,C24,C3,C40,C44,C58,C84 |
Chr2:15482383 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
Chr2:15482450 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B112,B20,B79,B93,C3 |
Chr2:15482455 |
CCT |
C |
2bp_deletion | frameshift_variant | 5 | B40,B97,C28,C38,C74 |
Chr2:15482455 |
CCT |
C |
2bp_deletion | CDS_variant | 5 | B40,B97,C28,C38,C74 |
Chr2:15482488 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B83,C19,C59 |
Chr2:15482510 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057795120.1PF26168
Glyco_transf_N 5-221 aa
PF00201
UDPGT 245-369 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795120.1 |
Pfam | PF26168 |
Glyco_transf_N | Domain | 5 | 221 | 1.2e-71 | 242.0 | Glycosyltransferase, N-terminal domain |
XP_057795120.1 |
Pfam | PF00201 |
UDPGT | Family | 245 | 369 | 3.1e-18 | 66.6 | UDP-glucoronosyl and UDP-glucosyl transferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。