Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000903`

染色体: Chr02 坐标: 15541002-15567771 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000903`
名称	SmilChr02G000903
描述	probable LRR receptor-like serine/threonine-protein kinase At3g47570
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	15541002 - 15567771 / `-`

ID 对照

NCBI Gene ID	`LOC131008048`
GeneID	`131008048`
locus_tag	`-`
NCBI Name	`LOC131008048`
原始查询	`SmilChr02G000903`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable LRR receptor-like serine/threonine-protein kinase At3g47570
产物	probable LRR receptor-like serine/threonine-protein kinase At3g47570
Arabidopsis	`AT3G47570` (AT3G47570) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823911] identity=37.7; qcov=0.806; evalue=0; confidence=medium
Rice	`Os02g0216000` (B1307A11.13) - identity=39.1; qcov=1.01; evalue=0; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131008048

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057790934.1`
2	Nucleus	细胞核	0.00000	`XP_057790934.1`
3	Chromosome	染色体	0.00000	`XP_057790934.1`
4	Centromere	着丝粒	0.00000	`XP_057790934.1`
5	Chromatin	染色质	0.00000	`XP_057790934.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:15542846`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B140,C85
`Chr2:15543318`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:15543351`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B28
`Chr2:15543351`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B28
`Chr2:15543361`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr2:15543401`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr2:15543471`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr2:15543491`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr2:15543602`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B4,C11,C83,D5
`Chr2:15543653`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B103,B30,B82
`Chr2:15543757`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr2:15543857`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790934.1

1159 aa

580

1159

LRRNT_2

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 29-70 aa PF00560 LRR_1 147-169 aa PF13855 LRR_8 147-206 aa PF00560 LRR_1 171-193 aa PF00560 LRR_1 269-290 aa PF00560 LRR_1 341-363 aa PF00560 LRR_1 390-411 aa PF13855 LRR_8 441-498 aa PF00560 LRR_1 463-485 aa PF00560 LRR_1 567-589 aa PF13855 LRR_8 567-626 aa PF00560 LRR_1 591-613 aa PF00560 LRR_1 615-636 aa PF00560 LRR_1 664-685 aa PF00560 LRR_1 690-709 aa PF00560 LRR_1 735-757 aa PF00069 Pkinase 878-1147 aa PF07714 PK_Tyr_Ser-Thr 881-1145 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790934.1`	Pfam	`PF08263`	LRRNT_2	Family	29	70	2.9e-09	37.7	Leucine rich repeat N-terminal domain
`XP_057790934.1`	Pfam	`PF00560`	LRR_1	Repeat	147	169	9.4e-58	180.3	Leucine Rich Repeat
`XP_057790934.1`	Pfam	`PF13855`	LRR_8	Repeat	147	206	4.4e-48	161.6	Leucine rich repeat
`XP_057790934.1`	Pfam	`PF00560`	LRR_1	Repeat	171	193	9.4e-58	180.3	Leucine Rich Repeat
`XP_057790934.1`	Pfam	`PF00560`	LRR_1	Repeat	269	290	9.4e-58	180.3	Leucine Rich Repeat
`XP_057790934.1`	Pfam	`PF00560`	LRR_1	Repeat	341	363	9.4e-58	180.3	Leucine Rich Repeat
`XP_057790934.1`	Pfam	`PF00560`	LRR_1	Repeat	390	411	9.4e-58	180.3	Leucine Rich Repeat
`XP_057790934.1`	Pfam	`PF13855`	LRR_8	Repeat	441	498	4.4e-48	161.6	Leucine rich repeat
`XP_057790934.1`	Pfam	`PF00560`	LRR_1	Repeat	463	485	9.4e-58	180.3	Leucine Rich Repeat
`XP_057790934.1`	Pfam	`PF00560`	LRR_1	Repeat	567	589	9.4e-58	180.3	Leucine Rich Repeat
`XP_057790934.1`	Pfam	`PF13855`	LRR_8	Repeat	567	626	4.4e-48	161.6	Leucine rich repeat
`XP_057790934.1`	Pfam	`PF00560`	LRR_1	Repeat	591	613	9.4e-58	180.3	Leucine Rich Repeat
`XP_057790934.1`	Pfam	`PF00560`	LRR_1	Repeat	615	636	9.4e-58	180.3	Leucine Rich Repeat
`XP_057790934.1`	Pfam	`PF00560`	LRR_1	Repeat	664	685	9.4e-58	180.3	Leucine Rich Repeat
`XP_057790934.1`	Pfam	`PF00560`	LRR_1	Repeat	690	709	9.4e-58	180.3	Leucine Rich Repeat
`XP_057790934.1`	Pfam	`PF00560`	LRR_1	Repeat	735	757	9.4e-58	180.3	Leucine Rich Repeat
`XP_057790934.1`	Pfam	`PF00069`	Pkinase	Domain	878	1147	7.9e-42	144.2	Protein kinase domain
`XP_057790934.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	881	1145	4.4e-39	135.1	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057934951.1
ACCTTCCAATTTGCAGCCATGGAGAAAAAGTTTTATTACATTTTTGCATATGCAGTCCTCACCATAATAACCTTCCCAATGCCTCCTTGTGCAATGAGCCTTGCCACTGATCAAGCTGCCCTTCTTGCCTTAAAAATGCGCATAACCTCAGACCCTTTCCGTATGCTTGCAACAAATTGGAGCAATAACTCGAGCTCCGTCTGCAGCTGGATTGGCGTCACTTGCAGTTTGCCACACCAAAGAGTAACAGCCTTGAATCT...

CDS

1 records

下载 CDS FASTA

LOC131008048
ATGGAGAAAAAGTTTTATTACATTTTTGCATATGCAGTCCTCACCATAATAACCTTCCCAATGCCTCCTTGTGCAATGAGCCTTGCCACTGATCAAGCTGCCCTTCTTGCCTTAAAAATGCGCATAACCTCAGACCCTTTCCGTATGCTTGCAACAAATTGGAGCAATAACTCGAGCTCCGTCTGCAGCTGGATTGGCGTCACTTGCAGTTTGCCACACCAAAGAGTAACAGCCTTGAATCTCTCTTTCATGAATCTCGT...

Protein

1 records

下载 Protein FASTA

XP_057790934.1
MEKKFYYIFAYAVLTIITFPMPPCAMSLATDQAALLALKMRITSDPFRMLATNWSNNSSSVCSWIGVTCSLPHQRVTALNLSFMNLVGTIPPQLGRLSFLVTLDLTSNLFSGILPYELSLLRRLEFISLALNNFTGAFPPVLSQLSKLEYLVLDNNSFTGSIPKSISNLTNLQVLSLYANSLSGEIPEELGRLGSLQDLEVEYNGLSGGIPSAIFNISTLQYIAFTYNELSGSLPPDMCSNLPFLAGIFLTGNELSGEIP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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