当前解析结果
SmilChr02G000915| 统一新 Gene ID | SmilChr02G000915 |
|---|---|
| 名称 | SmilChr02G000915 |
| 描述 | leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 15852719 - 15868671 / - |
| NCBI Gene ID | LOC131008054 |
|---|---|
| GeneID | 131008054 |
| locus_tag | - |
| NCBI Name | LOC131008054 |
| 原始查询 | SmilChr02G000915 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 |
| 产物 | leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 |
| Arabidopsis | AT1G17230 (AT1G17230)Leucine-rich receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838294] identity=39.3; qcov=0.897; evalue=9.43e-72; confidence=medium |
| Rice | Os11g0695800 (MRKc)- identity=38; qcov=0.933; evalue=4.26e-72; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF08263 (LRRNT_2); PF13855 (LRR_8); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008054 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057790939.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057790939.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057790939.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057790939.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057790939.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:15852724 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B62 |
Chr2:15852822 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B62 |
Chr2:15853216 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A9 |
Chr2:15867790 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:15867892 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B104,C28,C36,C72 |
Chr2:15868063 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B32,C5 |
Chr2:15868064 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B47,B69,B98,C52,C62 |
Chr2:15868092 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B69,B98,C52 |
Chr2:15868414 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr2:15868474 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B122,B97,C30 |
Chr2:15868591 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B113,B133,B75 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790939.1PF08263
LRRNT_2 29-70 aa
PF23598
LRR_14 94-205 aa
PF00560
LRR_1 147-169 aa
PF13855
LRR_8 147-206 aa
PF00560
LRR_1 171-193 aa
PF00560
LRR_1 269-290 aa
PF00560
LRR_1 335-357 aa
PF00560
LRR_1 360-378 aa
PF00560
LRR_1 384-405 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790939.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 29 | 70 | 1.3e-09 | 38.9 | Leucine rich repeat N-terminal domain |
XP_057790939.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 94 | 205 | 8e-38 | 130.8 | Leucine-rich repeat region |
XP_057790939.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 147 | 169 | 4e-34 | 110.0 | Leucine Rich Repeat |
XP_057790939.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 147 | 206 | 8e-23 | 80.7 | Leucine rich repeat |
XP_057790939.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 171 | 193 | 4e-34 | 110.0 | Leucine Rich Repeat |
XP_057790939.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 269 | 290 | 4e-34 | 110.0 | Leucine Rich Repeat |
XP_057790939.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 335 | 357 | 4e-34 | 110.0 | Leucine Rich Repeat |
XP_057790939.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 360 | 378 | 4e-34 | 110.0 | Leucine Rich Repeat |
XP_057790939.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 384 | 405 | 4e-34 | 110.0 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。