当前解析结果
SmilChr02G000917| 统一新 Gene ID | SmilChr02G000917 |
|---|---|
| 名称 | SmilChr02G000917 |
| 描述 | zeatin O-xylosyltransferase-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 15893831 - 15895440 / - |
| NCBI Gene ID | LOC131011357 |
|---|---|
| GeneID | 131011357 |
| locus_tag | - |
| NCBI Name | LOC131011357 |
| 原始查询 | SmilChr02G000917 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zeatin O-xylosyltransferase-like |
| 产物 | zeatin O-xylosyltransferase-like |
| Arabidopsis | AT3G46670 (UGT76E11)UDP-glucosyl transferase 76E11 [Source:NCBI gene (formerly Entrezgene);Acc:823820] identity=29; qcov=1.08; evalue=1.3e-51; confidence=low |
| Rice | Os04g0565400 (CZOGT3)- identity=39.9; qcov=1.03; evalue=3.41e-107; confidence=medium |
| GO | GO:0008194 (UDP-glycosyltransferase activity) |
| KEGG | smil00908 (Zeatin biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00201 (UDPGT); PF26168 (Glyco_transf_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011357 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057795136.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057795136.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057795136.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057795136.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057795136.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:15894075 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B84 |
Chr2:15894075 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B84 |
Chr2:15894090 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B121,B23,C80 |
Chr2:15894097 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B96 |
Chr2:15894104 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A15,C15 |
Chr2:15894122 |
CCG |
C |
2bp_deletion | frameshift_variant | 1 | C5 |
Chr2:15894122 |
CCG |
C |
2bp_deletion | CDS_variant | 1 | C5 |
Chr2:15894213 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A22,B6,C63 |
Chr2:15894227 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | D4 |
Chr2:15894227 |
TC |
T |
1bp_deletion | CDS_variant | 1 | D4 |
Chr2:15894305 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr2:15894346 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057795136.1PF26168
Glyco_transf_N 11-241 aa
PF00201
UDPGT 248-382 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795136.1 |
Pfam | PF26168 |
Glyco_transf_N | Domain | 11 | 241 | 4.3e-76 | 256.6 | Glycosyltransferase, N-terminal domain |
XP_057795136.1 |
Pfam | PF00201 |
UDPGT | Family | 248 | 382 | 1.5e-26 | 94.0 | UDP-glucoronosyl and UDP-glucosyl transferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。