Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000936`

染色体: Chr02 坐标: 16337052-16340283 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000936`
名称	SmilChr02G000936
描述	WEB family protein At1g12150-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	16337052 - 16340283 / `-`

ID 对照

NCBI Gene ID	`LOC131011371`
GeneID	`131011371`
locus_tag	`-`
NCBI Name	`LOC131011371`
原始查询	`SmilChr02G000936`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	WEB family protein At1g12150-like
产物	WEB family protein At1g12150-like
Arabidopsis	`AT1G12150` (AT1G12150) weak chloroplast movement under blue light protein (DUF827) [Source:NCBI gene (formerly Entrezgene);Acc:837767] identity=35.2; qcov=0.947; evalue=8.32e-73; confidence=medium
Rice	`Os12g0271600` (BIP134) - identity=40.6; qcov=0.942; evalue=1.78e-95; confidence=medium
GO	-
KEGG	-
Pfam	PF05701 (WEMBL)
InterPro	-
eggNOG	-
NR	GeneID:131011371

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057795157.1`
2	Cytosol	细胞质基质	0.60000	`XP_057795157.1`
3	Cytoplasm	细胞质	0.20000	`XP_057795157.1`
4	Nucleus	细胞核	0.00000	`XP_057795157.1`
5	Chromosome	染色体	0.00000	`XP_057795157.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:16337097`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B137
`Chr2:16337251`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A22,B104
`Chr2:16337293`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B15,B53,C37,C8,D11
`Chr2:16337662`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B23,B4,C27,C44
`Chr2:16337731`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr2:16337850`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr2:16337869`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B107,C24,C9,D7,D9
`Chr2:16337881`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:16337899`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B107,B140,D9
`Chr2:16337917`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr2:16338097`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B127,B23,B32,B53,B71
`Chr2:16338415`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795157.1

588 aa

294

588

WEMBL

PF05701 WEMBL 40-578 aa

XP_057795158.1

588 aa

294

588

WEMBL

PF05701 WEMBL 40-578 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795157.1`	Pfam	`PF05701`	WEMBL	Coiled-coil	40	578	9.4e-41	140.9	Weak chloroplast movement under blue light
`XP_057795158.1`	Pfam	`PF05701`	WEMBL	Coiled-coil	40	578	9.4e-41	140.9	Weak chloroplast movement under blue light

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057939175.1
TTTAATTCCATTTTCTTTTCCTTCTTGTTAGTTTTTCTTTTAGGAGGAGAAAAACAGACTTTGAGTTTTCCATTTGAATCAAGAAAACTCCCCCCTCACCTATATATTTTATTACTAAATAGAGGAGTAAATATATATTTTTATTTTTGAAAAATAAATATAGGAGTAGTTATTTGTGTCAAGATCGATCATCATCATCATTAATTGATCTGAGGGGAACTGTTTGGAGCTTTCAATTCTTTTCCCCATTCTTTTAAACG...

XM_057939174.1
TTAATTCCATTTTCTTTTCCTTCTTGTTAGTTTTTCTTTTAGGAGGAGAAAAACAGACTTTGAGTTTTCCATTTGAATCAAGAAAACTCCCCCCTCACCTATATATTTTATTACTAAATAGAGGAGTAAATATATATTTTTATTTTTGAAAAATAAATATAGGAGTAGTTATTTGTGTCAAGATCGATCATCATCATCATTAATTGATCTGAGGGGAACTGTTTGGAGCTTTCAATTCTTTTCCCCATTCTTTTAAACGA...

CDS

2 records

下载 CDS FASTA

LOC131011371
ATGTTCGGATTCACTGTAAGAACATTGCAAAATGGGTTTGGTTCACCGAGATCTCCGAGCGCAGTTGCACGAGTGGAATCTCCCAAGGTGTCGTCTTCTCCGAAAACCGACGTCGGAGAAATCGACACTCGCGCACCCTTCGAATCCGTCAAGGCTGCCGTTAGTTTATTCGGCGAAGTTATCTCGCCCCGAGCAAGGCCCGTCACCAAGAAGACTAAAGCCGAGGAGCAAAAACTGCTGGAGAAAGAGACCCAACATCA...

Protein

2 records

下载 Protein FASTA

XP_057795157.1
MFGFTVRTLQNGFGSPRSPSAVARVESPKVSSSPKTDVGEIDTRAPFESVKAAVSLFGEVISPRARPVTKKTKAEEQKLLEKETQHHMVIKELEYYKEQLKGAENAKAQAHQDLQKANRALQDLTGKLENLSESKQAAIKATEAAKRRAAELEVQQTQAQMGSDAWKLELDLERERYKASSGELIVAKQELANLRQDFDAALEAKLAAFQRIEDARQATKASGERQNMLSKEVSMLRRALDQVKFDSLQAQEEHLKLIAE...

XP_057795158.1
MFGFTVRTLQNGFGSPRSPSAVARVESPKVSSSPKTDVGEIDTRAPFESVKAAVSLFGEVISPRARPVTKKTKAEEQKLLEKETQHHMVIKELEYYKEQLKGAENAKAQAHQDLQKANRALQDLTGKLENLSESKQAAIKATEAAKRRAAELEVQQTQAQMGSDAWKLELDLERERYKASSGELIVAKQELANLRQDFDAALEAKLAAFQRIEDARQATKASGERQNMLSKEVSMLRRALDQVKFDSLQAQEEHLKLIAE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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