Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000947`

染色体: Chr02 坐标: 16490702-16496248 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000947`
名称	SmilChr02G000947
描述	transcriptional adapter ADA2b
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	16490702 - 16496248 / `+`

ID 对照

NCBI Gene ID	`LOC131011384`
GeneID	`131011384`
locus_tag	`-`
NCBI Name	`LOC131011384`
原始查询	`SmilChr02G000947`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcriptional adapter ADA2b
产物	transcriptional adapter ADA2b
Arabidopsis	`AT4G16420` (ADA2B) ADA2 2B [Source:NCBI gene (formerly Entrezgene);Acc:827336] identity=54.3; qcov=1.07; evalue=0; confidence=high
Rice	`Os03g0750800` (OsHXA701) - identity=51.2; qcov=1.11; evalue=2.25e-176; confidence=high
GO	GO:0003682 (chromatin binding); GO:0003713 (transcription coactivator activity); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0006338 (chromatin remodeling); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0008270 (zinc ion binding); GO:0035066 (GO:0035066)
KEGG	-
Pfam	PF00249 (Myb_DNA-binding); PF00569 (ZZ); PF13921 (Myb_DNA-bind_6); PF22941 (TADA2A-like_3rd); PF25299 (ZZ_ADA2)
InterPro	-
eggNOG	-
NR	GeneID:131011384

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057795165.1`
2	Nucleoplasm	核质	1.00000	`XP_057795172.1`
3	Chromosome	染色体	0.00000	`XP_057795165.1`
4	Centromere	着丝粒	0.00000	`XP_057795165.1`
5	Chromatin	染色质	0.00000	`XP_057795165.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:16491065`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C80
`Chr2:16492625`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr2:16492998`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B23,B4,C27,C44,D3
`Chr2:16493826`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B32,D11
`Chr2:16494973`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B93,C5
`Chr2:16495073`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B75,C22,C87
`Chr2:16495609`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B41,B61,B64
`Chr2:16495620`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B119,C26
`Chr2:16495723`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C28,C45,D11
`Chr2:16495765`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B131,B42,B43,C50
`Chr2:16496025`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C28,C45,D11
`Chr2:16496028`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795165.1

533 aa

266

533

ZZ_ADA2

Myb_DNA-binding

Myb_DNA-bind_6

TADA2A-like_3rd

PF00569 ZZ 46-88 aa PF25299 ZZ_ADA2 49-95 aa PF00249 Myb_DNA-binding 106-148 aa PF13921 Myb_DNA-bind_6 107-152 aa PF22941 TADA2A-like_3rd 271-338 aa

XP_057795166.1

533 aa

266

533

ZZ_ADA2

Myb_DNA-binding

Myb_DNA-bind_6

TADA2A-like_3rd

PF00569 ZZ 46-88 aa PF25299 ZZ_ADA2 49-95 aa PF00249 Myb_DNA-binding 106-148 aa PF13921 Myb_DNA-bind_6 107-152 aa PF22941 TADA2A-like_3rd 271-338 aa

XP_057795168.1

529 aa

264

529

ZZ_ADA2

Myb_DNA-binding

Myb_DNA-bind_6

TADA2A-like_3rd

PF00569 ZZ 46-88 aa PF25299 ZZ_ADA2 49-95 aa PF00249 Myb_DNA-binding 106-148 aa PF13921 Myb_DNA-bind_6 107-152 aa PF22941 TADA2A-like_3rd 267-334 aa

XP_057795169.1

529 aa

264

529

ZZ_ADA2

Myb_DNA-binding

Myb_DNA-bind_6

TADA2A-like_3rd

PF00569 ZZ 46-88 aa PF25299 ZZ_ADA2 49-95 aa PF00249 Myb_DNA-binding 106-148 aa PF13921 Myb_DNA-bind_6 107-152 aa PF22941 TADA2A-like_3rd 267-334 aa

XP_057795170.1

526 aa

263

526

ZZ_ADA2

Myb_DNA-binding

Myb_DNA-bind_6

TADA2A-like_3rd

PF00569 ZZ 46-88 aa PF25299 ZZ_ADA2 49-95 aa PF00249 Myb_DNA-binding 106-148 aa PF13921 Myb_DNA-bind_6 107-152 aa PF22941 TADA2A-like_3rd 264-331 aa

XP_057795171.1

526 aa

263

526

ZZ_ADA2

Myb_DNA-binding

Myb_DNA-bind_6

TADA2A-like_3rd

PF00569 ZZ 46-88 aa PF25299 ZZ_ADA2 49-95 aa PF00249 Myb_DNA-binding 106-148 aa PF13921 Myb_DNA-bind_6 107-152 aa PF22941 TADA2A-like_3rd 264-331 aa

XP_057795172.1

522 aa

261

522

ZZ_ADA2

Myb_DNA-binding

Myb_DNA-bind_6

TADA2A-like_3rd

PF00569 ZZ 46-88 aa PF25299 ZZ_ADA2 49-95 aa PF00249 Myb_DNA-binding 106-148 aa PF13921 Myb_DNA-bind_6 107-152 aa PF22941 TADA2A-like_3rd 260-327 aa

XP_057795173.1

503 aa

252

503

Myb_DNA-binding

Myb_DNA-bind_6

TADA2A-like_3rd

PF00249 Myb_DNA-binding 76-118 aa PF13921 Myb_DNA-bind_6 77-122 aa PF22941 TADA2A-like_3rd 241-308 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795165.1`	Pfam	`PF00569`	ZZ	Domain	46	88	1.9e-10	41.1	Zinc finger, ZZ type
`XP_057795165.1`	Pfam	`PF25299`	ZZ_ADA2	Domain	49	95	1.7e-15	57.6	ADA2 ZZ-type zing finger
`XP_057795165.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	106	148	1.9e-12	47.8	Myb-like DNA-binding domain
`XP_057795165.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	107	152	1.2e-06	29.4	Myb-like DNA-binding domain
`XP_057795165.1`	Pfam	`PF22941`	TADA2A-like_3rd	Domain	271	338	1.2e-29	103.0	Transcriptional adapter 2-alpha-like domain
`XP_057795166.1`	Pfam	`PF00569`	ZZ	Domain	46	88	1.9e-10	41.1	Zinc finger, ZZ type
`XP_057795166.1`	Pfam	`PF25299`	ZZ_ADA2	Domain	49	95	1.7e-15	57.6	ADA2 ZZ-type zing finger
`XP_057795166.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	106	148	1.9e-12	47.8	Myb-like DNA-binding domain
`XP_057795166.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	107	152	1.2e-06	29.4	Myb-like DNA-binding domain
`XP_057795166.1`	Pfam	`PF22941`	TADA2A-like_3rd	Domain	271	338	1.2e-29	103.0	Transcriptional adapter 2-alpha-like domain
`XP_057795168.1`	Pfam	`PF00569`	ZZ	Domain	46	88	1.9e-10	41.1	Zinc finger, ZZ type
`XP_057795168.1`	Pfam	`PF25299`	ZZ_ADA2	Domain	49	95	1.7e-15	57.6	ADA2 ZZ-type zing finger
`XP_057795168.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	106	148	1.9e-12	47.8	Myb-like DNA-binding domain
`XP_057795168.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	107	152	1.1e-06	29.4	Myb-like DNA-binding domain
`XP_057795168.1`	Pfam	`PF22941`	TADA2A-like_3rd	Domain	267	334	1.1e-29	103.0	Transcriptional adapter 2-alpha-like domain
`XP_057795169.1`	Pfam	`PF00569`	ZZ	Domain	46	88	1.9e-10	41.1	Zinc finger, ZZ type
`XP_057795169.1`	Pfam	`PF25299`	ZZ_ADA2	Domain	49	95	1.7e-15	57.6	ADA2 ZZ-type zing finger
`XP_057795169.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	106	148	1.9e-12	47.8	Myb-like DNA-binding domain
`XP_057795169.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	107	152	1.1e-06	29.4	Myb-like DNA-binding domain
`XP_057795169.1`	Pfam	`PF22941`	TADA2A-like_3rd	Domain	267	334	1.1e-29	103.0	Transcriptional adapter 2-alpha-like domain
`XP_057795170.1`	Pfam	`PF00569`	ZZ	Domain	46	88	1.8e-10	41.1	Zinc finger, ZZ type
`XP_057795170.1`	Pfam	`PF25299`	ZZ_ADA2	Domain	49	95	1.7e-15	57.6	ADA2 ZZ-type zing finger
`XP_057795170.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	106	148	1.9e-12	47.8	Myb-like DNA-binding domain
`XP_057795170.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	107	152	1.1e-06	29.4	Myb-like DNA-binding domain
`XP_057795170.1`	Pfam	`PF22941`	TADA2A-like_3rd	Domain	264	331	1.1e-29	103.0	Transcriptional adapter 2-alpha-like domain
`XP_057795171.1`	Pfam	`PF00569`	ZZ	Domain	46	88	1.8e-10	41.1	Zinc finger, ZZ type
`XP_057795171.1`	Pfam	`PF25299`	ZZ_ADA2	Domain	49	95	1.7e-15	57.6	ADA2 ZZ-type zing finger
`XP_057795171.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	106	148	1.9e-12	47.8	Myb-like DNA-binding domain
`XP_057795171.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	107	152	1.1e-06	29.4	Myb-like DNA-binding domain
`XP_057795171.1`	Pfam	`PF22941`	TADA2A-like_3rd	Domain	264	331	1.1e-29	103.0	Transcriptional adapter 2-alpha-like domain
`XP_057795172.1`	Pfam	`PF00569`	ZZ	Domain	46	88	1.8e-10	41.2	Zinc finger, ZZ type
`XP_057795172.1`	Pfam	`PF25299`	ZZ_ADA2	Domain	49	95	1.6e-15	57.6	ADA2 ZZ-type zing finger
`XP_057795172.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	106	148	1.9e-12	47.8	Myb-like DNA-binding domain
`XP_057795172.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	107	152	1.1e-06	29.4	Myb-like DNA-binding domain
`XP_057795172.1`	Pfam	`PF22941`	TADA2A-like_3rd	Domain	260	327	1.1e-29	103.1	Transcriptional adapter 2-alpha-like domain
`XP_057795173.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	76	118	1.8e-12	47.9	Myb-like DNA-binding domain
`XP_057795173.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	77	122	1e-06	29.6	Myb-like DNA-binding domain
`XP_057795173.1`	Pfam	`PF22941`	TADA2A-like_3rd	Domain	241	308	1e-29	103.2	Transcriptional adapter 2-alpha-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XM_057939182.1
GATTTTCTTAAAACATTAAAAGTCAATAGATGATAAATTCATGGACAAATGGATTCCAGAAAAGCAAACGGGAAAAACTGAAACCAAGCTTTAGTAAAACAAAAATAAGGAAACAACTAAATTTCTTGCATCTTTACAACGTTTCTCGACAGATACCCAAATTAATGTAATGGGTCGCTCGCGTGGGAATTTTCACGCTGAGGAAGATCCTAGTCAAAGATCAAGGAGAAAGAAGAATGCTCCAAGTGGAGAAAATTTAG...

XM_057939185.1
TAAAACATTAAAAGTCAATAGATGATAAATTCATGGACAAATGGATTCCAGAAAAGCAAACGGGAAAAACTGAAACCAAGCTTTAGTAAAACAAAAATAAGGAAACAACTAAATTTCTTGCATCTTTACAACGTTTCTCGACAGATACCCAAATTAATGTAATGGGTCGCTCGCGTGGGAATTTTCACGCTGAGGAAGATCCTAGTCAAAGATCAAGGAGAAAGAAGAATGCTCCAAGTGGAGAAAATTTAGAATCTGTT...

CDS

8 records

下载 CDS FASTA

LOC131011384
ATGGGTCGCTCGCGTGGGAATTTTCACGCTGAGGAAGATCCTAGTCAAAGATCAAGGAGAAAGAAGAATGCTCCAAGTGGAGAAAATTTAGAATCTGTTACTGCAGGTCAAGGAAGCAGTGATGGAAAAAGGGCATTATATCATTGTAACTATTGCAACAAAGACATTACTGGAAGAATTCGTATAAAATGTGCTGTATGTTCTGATTTTGACCTGTGCATAGAGTGTTTCTCAGTAGGTGCTGAGGTTCATCCTCATAA...

Protein

8 records

下载 Protein FASTA

XP_057795165.1
MGRSRGNFHAEEDPSQRSRRKKNAPSGENLESVTAGQGSSDGKRALYHCNYCNKDITGRIRIKCAVCSDFDLCIECFSVGAEVHPHKSGHPYRVMDILSFPLICPEWKADEEMLLLEGIEMYGMGNWAEVAEHVGTKTKEACIEHYRSAYLNSPYFPLPDMTHVMGKNRKELLAMAKGHLEDKKGELQLKEESTFSPSRVKIEDQYKSGPPGRLPSNSTTGAKVNKKLSNTVPAKDQGDVLEMEDNISGRSFGGNKPKSA...

XP_057795166.1
MGRSRGNFHAEEDPSQRSRRKKNAPSGENLESVTAGQGSSDGKRALYHCNYCNKDITGRIRIKCAVCSDFDLCIECFSVGAEVHPHKSGHPYRVMDILSFPLICPEWKADEEMLLLEGIEMYGMGNWAEVAEHVGTKTKEACIEHYRSAYLNSPYFPLPDMTHVMGKNRKELLAMAKGHLEDKKGELQLKEESTFSPSRVKIEDQYKSGPPGRLPSNSTTGAKVNKKLSNTVPAKDQGDVLEMEDNISGRSFGGNKPKSA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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