当前解析结果
SmilChr02G000960| 统一新 Gene ID | SmilChr02G000960 |
|---|---|
| 名称 | SmilChr02G000960 |
| 描述 | RNA cytidine acetyltransferase 1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 16742348 - 16754621 / + |
| NCBI Gene ID | LOC131011395 |
|---|---|
| GeneID | 131011395 |
| locus_tag | - |
| NCBI Name | LOC131011395 |
| 原始查询 | SmilChr02G000960 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RNA cytidine acetyltransferase 1-like |
| 产物 | RNA cytidine acetyltransferase 1-like |
| Arabidopsis | AT1G10490 (AT1G10490)GNAT acetyltransferase (DUF699) [Source:NCBI gene (formerly Entrezgene);Acc:837589] identity=65.6; qcov=1.01; evalue=0; confidence=high |
| Rice | Os12g0170700- identity=57.3; qcov=0.483; evalue=0; confidence=medium |
| GO | GO:0000049 (tRNA binding); GO:0005524 (ATP binding); GO:0005730 (nucleolus); GO:0030686 (90S preribosome); GO:1904812 (rRNA acetylation involved in maturation of SSU-rRNA); GO:1990883 (18S rRNA cytidine N-acetyltransferase activity) |
| KEGG | smil03008 (Ribosome biogenesis in eukaryotes - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF05127 (NAT10_TcmA_helicase); PF08351 (TmcA_N); PF13718 (GNAT_acetyltr_2); PF13725 (tRNA_bind_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011395 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057795187.1 |
| 2 | Nucleolus | 核仁 | 1.00000 | XP_057795187.1 |
| 3 | Nucleoplasm | 核质 | 0.40000 | XP_057795187.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057795187.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057795187.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:16743008 |
GA |
G |
1bp_deletion | frameshift_variant | 2 | B121,B15 |
Chr2:16743008 |
GA |
G |
1bp_deletion | CDS_variant | 2 | B121,B15 |
Chr2:16743013 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C80 |
Chr2:16743013 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C80 |
Chr2:16744406 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
Chr2:16744412 |
GA |
G |
1bp_deletion | frameshift_variant | 2 | B53,B8 |
Chr2:16744412 |
GA |
G |
1bp_deletion | CDS_variant | 2 | B53,B8 |
Chr2:16745072 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr2:16745203 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B137,C45,D11 |
Chr2:16745666 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B111,B137,B49,C74 |
Chr2:16746030 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B83,D8 |
Chr2:16748405 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B59,B69 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057795187.1PF08351
TmcA_N 1-202 aa
PF05127
NAT10_TcmA_helicase 321-517 aa
PF13718
GNAT_acetyltr_2 557-787 aa
PF13725
tRNA_bind_2 802-1008 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795187.1 |
Pfam | PF08351 |
TmcA_N | Domain | 1 | 202 | 1.2e-20 | 74.3 | tRNA(Met) cytidine acetyltransferase TmcA, N-terminal |
XP_057795187.1 |
Pfam | PF05127 |
NAT10_TcmA_helicase | Domain | 321 | 517 | 5.8e-55 | 186.6 | RNA cytidine acetyltransferase NAT10/TcmA, helicase domain |
XP_057795187.1 |
Pfam | PF13718 |
GNAT_acetyltr_2 | Family | 557 | 787 | 4.3e-93 | 311.6 | GNAT acetyltransferase 2 |
XP_057795187.1 |
Pfam | PF13725 |
tRNA_bind_2 | Family | 802 | 1008 | 1.2e-49 | 169.8 | Possible tRNA binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。