Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000969`

染色体: Chr02 坐标: 16918347-16921788 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000969`
名称	SmilChr02G000969
描述	pentatricopeptide repeat-containing protein At4g16390, chloroplastic
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	16918347 - 16921788 / `-`

ID 对照

NCBI Gene ID	`LOC131011402`
GeneID	`131011402`
locus_tag	`-`
NCBI Name	`LOC131011402`
原始查询	`SmilChr02G000969`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At4g16390, chloroplastic
产物	pentatricopeptide repeat-containing protein At4g16390%2C chloroplastic
Arabidopsis	`AT4G16390` (SVR7) pentatricopeptide (PPR) repeat-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:827333] identity=65.6; qcov=0.933; evalue=0; confidence=high
Rice	`Os03g0215900` (OsPPR676) - identity=55.4; qcov=0.803; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0009507 (chloroplast)
KEGG	-
Pfam	PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long)
InterPro	-
eggNOG	-
NR	GeneID:131011402

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057795199.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057795199.1`
3	Nucleus	细胞核	0.00000	`XP_057795199.1`
4	Chromosome	染色体	0.00000	`XP_057795199.1`
5	Centromere	着丝粒	0.00000	`XP_057795199.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:16919739`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B112
`Chr2:16919853`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B106,B136,B55
`Chr2:16919856`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B28,C36
`Chr2:16919892`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:16919967`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr2:16919970`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B28,C36
`Chr2:16920027`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B106,B136,B55
`Chr2:16920116`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	D11
`Chr2:16920116`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:16920125`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:16920141`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:16920451`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C27,C83

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795199.1

699 aa

350

699

PPR_3

PPR_2

PPR

PPR_long

PPR

PPR_3

PPR_2

PPR

PPR_long

PPR_3

PPR_2

PPR

PF13812 PPR_3 172-216 aa PF13041 PPR_2 172-217 aa PF01535 PPR 174-204 aa PF01535 PPR 209-239 aa PF01535 PPR 244-271 aa PF17177 PPR_long 254-361 aa PF01535 PPR 279-309 aa PF13812 PPR_3 300-359 aa PF13041 PPR_2 312-358 aa PF01535 PPR 315-344 aa PF01535 PPR 350-379 aa PF17177 PPR_long 365-505 aa PF13812 PPR_3 370-427 aa PF13041 PPR_2 382-427 aa PF01535 PPR 386-413 aa PF01535 PPR 421-450 aa PF01535 PPR 457-485 aa

XP_057795200.1

699 aa

350

699

PPR_3

PPR_2

PPR

PPR_long

PPR

PPR_3

PPR_2

PPR

PPR_long

PPR_3

PPR_2

PPR

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795199.1`	Pfam	`PF13812`	PPR_3	Repeat	172	216	4.2e-36	123.5	Pentatricopeptide repeat domain
`XP_057795199.1`	Pfam	`PF13041`	PPR_2	Repeat	172	217	1.1e-60	202.2	PPR repeat family
`XP_057795199.1`	Pfam	`PF01535`	PPR	Repeat	174	204	6e-56	183.6	PPR repeat
`XP_057795199.1`	Pfam	`PF01535`	PPR	Repeat	209	239	6e-56	183.6	PPR repeat
`XP_057795199.1`	Pfam	`PF01535`	PPR	Repeat	244	271	6e-56	183.6	PPR repeat
`XP_057795199.1`	Pfam	`PF17177`	PPR_long	Repeat	254	361	3.2e-24	86.2	Pentacotripeptide-repeat region of PRORP
`XP_057795199.1`	Pfam	`PF01535`	PPR	Repeat	279	309	6e-56	183.6	PPR repeat
`XP_057795199.1`	Pfam	`PF13812`	PPR_3	Repeat	300	359	4.2e-36	123.5	Pentatricopeptide repeat domain
`XP_057795199.1`	Pfam	`PF13041`	PPR_2	Repeat	312	358	1.1e-60	202.2	PPR repeat family
`XP_057795199.1`	Pfam	`PF01535`	PPR	Repeat	315	344	6e-56	183.6	PPR repeat
`XP_057795199.1`	Pfam	`PF01535`	PPR	Repeat	350	379	6e-56	183.6	PPR repeat
`XP_057795199.1`	Pfam	`PF17177`	PPR_long	Repeat	365	505	3.2e-24	86.2	Pentacotripeptide-repeat region of PRORP
`XP_057795199.1`	Pfam	`PF13812`	PPR_3	Repeat	370	427	4.2e-36	123.5	Pentatricopeptide repeat domain
`XP_057795199.1`	Pfam	`PF13041`	PPR_2	Repeat	382	427	1.1e-60	202.2	PPR repeat family
`XP_057795199.1`	Pfam	`PF01535`	PPR	Repeat	386	413	6e-56	183.6	PPR repeat
`XP_057795199.1`	Pfam	`PF01535`	PPR	Repeat	421	450	6e-56	183.6	PPR repeat
`XP_057795199.1`	Pfam	`PF01535`	PPR	Repeat	457	485	6e-56	183.6	PPR repeat
`XP_057795200.1`	Pfam	`PF13812`	PPR_3	Repeat	172	216	4.2e-36	123.5	Pentatricopeptide repeat domain
`XP_057795200.1`	Pfam	`PF13041`	PPR_2	Repeat	172	217	1.1e-60	202.2	PPR repeat family
`XP_057795200.1`	Pfam	`PF01535`	PPR	Repeat	174	204	6e-56	183.6	PPR repeat
`XP_057795200.1`	Pfam	`PF01535`	PPR	Repeat	209	239	6e-56	183.6	PPR repeat
`XP_057795200.1`	Pfam	`PF01535`	PPR	Repeat	244	271	6e-56	183.6	PPR repeat
`XP_057795200.1`	Pfam	`PF17177`	PPR_long	Repeat	254	361	3.2e-24	86.2	Pentacotripeptide-repeat region of PRORP
`XP_057795200.1`	Pfam	`PF01535`	PPR	Repeat	279	309	6e-56	183.6	PPR repeat
`XP_057795200.1`	Pfam	`PF13812`	PPR_3	Repeat	300	359	4.2e-36	123.5	Pentatricopeptide repeat domain
`XP_057795200.1`	Pfam	`PF13041`	PPR_2	Repeat	312	358	1.1e-60	202.2	PPR repeat family
`XP_057795200.1`	Pfam	`PF01535`	PPR	Repeat	315	344	6e-56	183.6	PPR repeat
`XP_057795200.1`	Pfam	`PF01535`	PPR	Repeat	350	379	6e-56	183.6	PPR repeat
`XP_057795200.1`	Pfam	`PF17177`	PPR_long	Repeat	365	505	3.2e-24	86.2	Pentacotripeptide-repeat region of PRORP
`XP_057795200.1`	Pfam	`PF13812`	PPR_3	Repeat	370	427	4.2e-36	123.5	Pentatricopeptide repeat domain
`XP_057795200.1`	Pfam	`PF13041`	PPR_2	Repeat	382	427	1.1e-60	202.2	PPR repeat family
`XP_057795200.1`	Pfam	`PF01535`	PPR	Repeat	386	413	6e-56	183.6	PPR repeat
`XP_057795200.1`	Pfam	`PF01535`	PPR	Repeat	421	450	6e-56	183.6	PPR repeat
`XP_057795200.1`	Pfam	`PF01535`	PPR	Repeat	457	485	6e-56	183.6	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009096898.1
GTTGTGTTGTCAAGTGATAAGGCCGTGAAACCCCCAAAACCCCAGACTTCTCTCTGCTCACCCAGCAATGGCGTACAACCTCACAGCCCCGCCTTCGTCTTCTCTCTTCTCCGAAACCAGTCTATTCTGCACCTATCTCTCCCCTCCTAAGCTCTCACATCTCAGAATCCCCACAAATCTCAACTTTCCTCCCAAACTCCAACGCCCAAAACTCTCCTTTCATGTCTCCGCTGAAGTCTCATTGCAGGAACCTCTCCTCA...

XR_009096899.1
TTGTCAAGTGATAAGGCCGTGAAACCCCCAAAACCCCAGACTTCTCTCTGCTCACCCAGCAATGGCGTACAACCTCACAGCCCCGCCTTCGTCTTCTCTCTTCTCCGAAACCAGTCTATTCTGCACCTATCTCTCCCCTCCTAAGCTCTCACATCTCAGAATCCCCACAAATCTCAACTTTCCTCCCAAACTCCAACGCCCAAAACTCTCCTTTCATGTCTCCGCTGAAGTCTCATTGCAGGAACCTCTCCTCAACGCAG...

CDS

2 records

下载 CDS FASTA

LOC131011402
ATGGCGTACAACCTCACAGCCCCGCCTTCGTCTTCTCTCTTCTCCGAAACCAGTCTATTCTGCACCTATCTCTCCCCTCCTAAGCTCTCACATCTCAGAATCCCCACAAATCTCAACTTTCCTCCCAAACTCCAACGCCCAAAACTCTCCTTTCATGTCTCCGCTGAAGTCTCATTGCAGGAACCTCTCCTCAACGCAGTCGGTCAAGATTCTGAAATCCCAAACCAAAAGTCGGTTCCTCCATCCAAATCGTTCGTTTG...

Protein

2 records

下载 Protein FASTA

XP_057795199.1
MAYNLTAPPSSSLFSETSLFCTYLSPPKLSHLRIPTNLNFPPKLQRPKLSFHVSAEVSLQEPLLNAVGQDSEIPNQKSVPPSKSFVWVNPKNPKASKLMKTSRDLRYASLLKIAESLNSCAPLDDTISGVLGVLGDNIVEQEAVVILNNMSNSETAPLVLDYFLKRLKMIREVVLYNVTLKVFRKCKELGKAESLFSLMLERGVKPDNVTFSTIISCARLSSLPEKAVEWFEKMSSFGCEPDKVTCSVMIDVYGRVGNVA...

XP_057795200.1
MAYNLTAPPSSSLFSETSLFCTYLSPPKLSHLRIPTNLNFPPKLQRPKLSFHVSAEVSLQEPLLNAVGQDSEIPNQKSVPPSKSFVWVNPKNPKASKLMKTSRDLRYASLLKIAESLNSCAPLDDTISGVLGVLGDNIVEQEAVVILNNMSNSETAPLVLDYFLKRLKMIREVVLYNVTLKVFRKCKELGKAESLFSLMLERGVKPDNVTFSTIISCARLSSLPEKAVEWFEKMSSFGCEPDKVTCSVMIDVYGRVGNVA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器