当前解析结果
SmilChr02G000970| 统一新 Gene ID | SmilChr02G000970 |
|---|---|
| 名称 | SmilChr02G000970 |
| 描述 | pollen-specific leucine-rich repeat extensin-like protein 1 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 16971727 - 16973227 / - |
| NCBI Gene ID | LOC131011403 |
|---|---|
| GeneID | 131011403 |
| locus_tag | - |
| NCBI Name | LOC131011403 |
| 原始查询 | SmilChr02G000970 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pollen-specific leucine-rich repeat extensin-like protein 1 |
| 产物 | pollen-specific leucine-rich repeat extensin-like protein 1 |
| Arabidopsis | AT4G16380 (AT4G16380)Heavy metal transport/detoxification superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:2745712] identity=70.3; qcov=0.279; evalue=3.77e-29; confidence=weak |
| Rice | Os03g0412300- identity=37.2; qcov=0.294; evalue=1.08e-10; confidence=weak |
| GO | GO:0046872 (metal ion binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011403 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057795201.1 |
| 2 | Cell membrane | 细胞膜 | 0.60000 | XP_057795201.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057795201.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057795201.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057795201.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:16972026 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr2:16972105 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr2:16972174 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B106,B136,B49,B55 |
Chr2:16972213 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr2:16972387 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A6,B110,B140,B18,C10 |
Chr2:16972394 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr2:16972624 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B41,B61 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。