当前解析结果
SmilChr02G000971| 统一新 Gene ID | SmilChr02G000971 |
|---|---|
| 名称 | SmilChr02G000971 |
| 描述 | zinc finger BED domain-containing protein RICESLEEPER 2-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 17005463 - 17008461 / - |
| NCBI Gene ID | LOC131011404 |
|---|---|
| GeneID | 131011404 |
| locus_tag | - |
| NCBI Name | LOC131011404 |
| 原始查询 | SmilChr02G000971 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc finger BED domain-containing protein RICESLEEPER 2-like |
| 产物 | zinc finger BED domain-containing protein RICESLEEPER 2-like |
| Arabidopsis | AT3G42170 (DAYSLEEPER)BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER [Source:NCBI gene (formerly Entrezgene);Acc:3769417] identity=29.7; qcov=0.846; evalue=3.58e-98; confidence=low |
| Rice | Os10g0443400- identity=34.4; qcov=0.898; evalue=2.07e-118; confidence=low |
| GO | GO:0003677 (DNA binding); GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF05699 (Dimer_Tnp_hAT); PF14372 (hAT-like_RNase-H); PF27039 (ZBED1_RNase-like_helical); PF27041 (ZBED1_RNase-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011404 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057795202.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057795202.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057795202.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057795202.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057795202.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:17005806 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B46,D8 |
Chr2:17005844 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B89,C75 |
Chr2:17005866 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B118,B72,B78,C74 |
Chr2:17005873 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B140,B42,D1 |
Chr2:17005875 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B39,B73 |
Chr2:17005908 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B25,B59,C40,D8 |
Chr2:17005929 |
A |
AT |
1bp_insertion | frameshift_variant | 4 | B117,B122,C16,C61 |
Chr2:17005929 |
A |
AT |
1bp_insertion | CDS_variant | 4 | B117,B122,C16,C61 |
Chr2:17005988 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B69,B87,C28,C61,D9 |
Chr2:17005993 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A9,B10,B82,C76 |
Chr2:17005998 |
G |
A |
EMS_canonical_SNV | stop_gained | 81 | A10,A11,A15,A19,A20,A23,A3,A4,A7,A8,B102,B103,B11,B113,B114,B117,B12,B120,B121,B125,B131,B133,B137,B18,B19,B2,B20,B27,B3,B31,B32,B37,B46,B50,B51,B55,B58,B61,B69,B7,B70,B74,B77,B78,B81,B84,B85,B86,B89,B97,C1,C14,C2,C21,C31,C36,C4,C41,C42,C43,C45,C46,C50,C51,C59,C6,C62,C63,C65,C71,C73,C74,C77,C81,C82,C83,C85,C87,D11,D3,D6 |
Chr2:17006014 |
C |
T |
EMS_canonical_SNV | stop_gained | 10 | B102,B119,B21,B22,B30,C1,C15,C67,C82,C9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057795202.1PF27041
ZBED1_RNase-like 273-369 aa
PF27039
ZBED1_RNase-like_helical 372-484 aa
PF14372
hAT-like_RNase-H 504-595 aa
PF05699
Dimer_Tnp_hAT 648-729 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795202.1 |
Pfam | PF27041 |
ZBED1_RNase-like | Domain | 273 | 369 | 1.4e-31 | 109.2 | ZBED1 RNase-like domain |
XP_057795202.1 |
Pfam | PF27039 |
ZBED1_RNase-like_helical | Domain | 372 | 484 | 1.7e-35 | 122.1 | ZBED1 RNase-like helical domain |
XP_057795202.1 |
Pfam | PF14372 |
hAT-like_RNase-H | Domain | 504 | 595 | 1.2e-22 | 80.6 | hAT-like transposase, RNase-H fold |
XP_057795202.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 648 | 729 | 1e-29 | 102.9 | hAT family C-terminal dimerisation region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。