当前解析结果
SmilChr02G000972| 统一新 Gene ID | SmilChr02G000972 |
|---|---|
| 名称 | SmilChr02G000972 |
| 描述 | uncharacterized SmilChr02G000972 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 17015978 - 17017336 / + |
| NCBI Gene ID | LOC131008069 |
|---|---|
| GeneID | 131008069 |
| locus_tag | - |
| NCBI Name | LOC131008069 |
| 原始查询 | SmilChr02G000972 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os02g0827300; species=rice; confidence=high |
| 产物 | hit=Os02g0827300; species=rice; confidence=high |
| Arabidopsis | AT4G21660 (AT4G21660)proline-rich spliceosome-associated (PSP) family protein [Source:NCBI gene (formerly Entrezgene);Acc:828253] identity=67; qcov=1.05; evalue=1.27e-84; confidence=high |
| Rice | Os02g0827300- identity=73.8; qcov=0.958; evalue=5.99e-90; confidence=high |
| GO | GO:0000398 (mRNA splicing, via spliceosome); GO:0005634 (nucleus); GO:0005684 (U2-type spliceosomal complex); GO:0005686 (U2 snRNP); GO:0005689 (U12-type spliceosomal complex); GO:0071011 (precatalytic spliceosome); GO:0071013 (catalytic step 2 spliceosome) |
| KEGG | - |
| Pfam | PF04037 (DUF382); PF04046 (PSP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008069 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057790953.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057790953.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057790953.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057790953.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057790953.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:17016102 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B43 |
Chr2:17016104 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr2:17016789 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B128 |
Chr2:17016790 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | B66,C7,C73 |
Chr2:17016790 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B66,C7,C73 |
Chr2:17016795 |
A |
ATT |
2bp_insertion | frameshift_variant | 44 | A1,A16,A2,A3,B114,B115,B122,B124,B129,B132,B138,B14,B18,B19,B20,B25,B3,B31,B37,B4,B53,B56,B6,B66,B69,B70,B73,B78,B87,B96,C12,C20,C32,C4,C42,C47,C5,C65,C67,C68,C71,C77,C82,C85 |
Chr2:17016829 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B114,B130,B42,B61,B84 |
Chr2:17016840 |
C |
CA |
1bp_insertion | frameshift_variant | 4 | B114,B130,B42,B61 |
Chr2:17016840 |
C |
CA |
1bp_insertion | CDS_variant | 4 | B114,B130,B42,B61 |
Chr2:17016882 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,B22,B89,C6 |
Chr2:17017054 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A8,B25,B68,C84 |
Chr2:17017075 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B15,B47,C60,C61 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790953.1PF04037
DUF382 24-50 aa
PF04037
DUF382 50-77 aa
PF04046
PSP 86-131 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790953.1 |
Pfam | PF04037 |
DUF382 | Family | 24 | 50 | 7.1e-18 | 65.7 | Domain of unknown function (DUF382) |
XP_057790953.1 |
Pfam | PF04037 |
DUF382 | Family | 50 | 77 | 7.1e-18 | 65.7 | Domain of unknown function (DUF382) |
XP_057790953.1 |
Pfam | PF04046 |
PSP | Family | 86 | 131 | 4.4e-24 | 84.7 | PSP |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。