Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000992`

染色体: Chr02 坐标: 17438728-17442511 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000992`
名称	SmilChr02G000992
描述	uncharacterized SmilChr02G000992
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	17438728 - 17442511 / `-`

ID 对照

NCBI Gene ID	`LOC131011419`
GeneID	`131011419`
locus_tag	`-`
NCBI Name	`LOC131011419`
原始查询	`SmilChr02G000992`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	FAD/NAD(P)-binding oxidoreductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:842051]; symbol=AT1G56000; hit=AT1G56000; species=arabidopsis; confidence=high
产物	FAD/NAD(P)-binding oxidoreductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:842051]; symbol=AT1G56000; hit=AT1G56000; species=arabidopsis; confidence=high
Arabidopsis	`AT1G56000` (AT1G56000) FAD/NAD(P)-binding oxidoreductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:842051] identity=59.2; qcov=1; evalue=2.2e-138; confidence=high
Rice	`Os03g0784000` - identity=55.9; qcov=0.994; evalue=5.71e-127; confidence=high
GO	-
KEGG	-
Pfam	PF01593 (Amino_oxidase); PF13450 (NAD_binding_8)
InterPro	-
eggNOG	-
NR	GeneID:131011419

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.60000	`XP_057795209.1`
2	Cytosol	细胞质基质	0.60000	`XP_057795211.1`
3	Cytoplasm	细胞质	0.40000	`XP_057795212.1`
4	Peroxisome	过氧化物酶体	0.40000	`XP_057795211.1`
5	Nucleus	细胞核	0.20000	`XP_057795209.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:17438851`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C18
`Chr2:17438851`	`TG`	`T`	1bp_deletion	CDS_variant	1	C18
`Chr2:17438944`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B102,C72
`Chr2:17439027`	`G`	`GT`	1bp_insertion	frameshift_variant	9	A18,B108,B109,B117,B135,C12,C23,C79,D2
`Chr2:17439032`	`G`	`A`	EMS_canonical_SNV	stop_gained	12	B101,B102,B108,B131,B42,B43,B86,B94,C50,C72,C75,D10
`Chr2:17439039`	`C`	`T`	EMS_canonical_SNV	stop_gained	13	B111,B14,B56,B69,B96,C1,C24,C34,C38,C40,C50,C84,C86
`Chr2:17439556`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B12,C32,C68
`Chr2:17439703`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C46,D4
`Chr2:17439719`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B12,C32,C68
`Chr2:17439779`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B26,B35,B69,C5
`Chr2:17439981`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B115,B137,B93,C5
`Chr2:17440838`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C46,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795209.1

367 aa

184

367

NAD_binding_8

Amino_oxidase

PF13450 NAD_binding_8 7-77 aa PF01593 Amino_oxidase 12-69 aa

XP_057795210.1

363 aa

182

363

NAD_binding_8

Amino_oxidase

PF13450 NAD_binding_8 7-77 aa PF01593 Amino_oxidase 12-69 aa

XP_057795211.1

337 aa

168

337

NAD_binding_8

Amino_oxidase

PF13450 NAD_binding_8 7-77 aa PF01593 Amino_oxidase 12-69 aa

XP_057795212.1

333 aa

166

333

NAD_binding_8

Amino_oxidase

PF13450 NAD_binding_8 7-77 aa PF01593 Amino_oxidase 12-69 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795209.1`	Pfam	`PF13450`	NAD_binding_8	Domain	7	77	3.6e-15	56.7	NAD(P)-binding Rossmann-like domain
`XP_057795209.1`	Pfam	`PF01593`	Amino_oxidase	Domain	12	69	2.3e-09	37.8	Flavin containing amine oxidoreductase
`XP_057795210.1`	Pfam	`PF13450`	NAD_binding_8	Domain	7	77	3.5e-15	56.7	NAD(P)-binding Rossmann-like domain
`XP_057795210.1`	Pfam	`PF01593`	Amino_oxidase	Domain	12	69	4.6e-10	40.1	Flavin containing amine oxidoreductase
`XP_057795211.1`	Pfam	`PF13450`	NAD_binding_8	Domain	7	77	3.4e-15	56.8	NAD(P)-binding Rossmann-like domain
`XP_057795211.1`	Pfam	`PF01593`	Amino_oxidase	Domain	12	69	7.7e-07	29.5	Flavin containing amine oxidoreductase
`XP_057795212.1`	Pfam	`PF13450`	NAD_binding_8	Domain	7	77	3.3e-15	56.8	NAD(P)-binding Rossmann-like domain
`XP_057795212.1`	Pfam	`PF01593`	Amino_oxidase	Domain	12	69	1.8e-07	31.5	Flavin containing amine oxidoreductase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057939226.1
CCCATTTGCTCTTAACGTTAGTTTGAAGGTTTGACACAATAAGGGGCTCCAATCACTCCACGTAACAAACACCCATGGATTCGATCATGGAATCGAGAACTCAAAGTGTAGCCTTTGCATTTAAGCGATTGCCATTCATCAATAGTGTTTGGCATTATTTGAATTTGATCTCAAAAAGGAGTAATCGCCGACACCAACATGGCATCCAAGGTCGCCGTCATCGGCAGCGGCATTTCAGGAGCAGTTTGCGCGTCGATTCT...

XM_057939227.1
TAACGTTAGTTTGAAGGTTTGACACAATAAGGGGCTCCAATCACTCCACGTAACAAACACCCATGGATTCGATCATGGAATCGAGAACTCAAAGTGTAGCCTTTGCATTTAAGCGATTGCCATTCATCAATAGTGTTTGGCATTATTTGAATTTGATCTCAAAAAGGAGTAATCGCCGACACCAACATGGCATCCAAGGTCGCCGTCATCGGCAGCGGCATTTCAGGAGCAGTTTGCGCGTCGATTCTGGCTAAGAACGG...

CDS

4 records

下载 CDS FASTA

LOC131011419
ATGGCATCCAAGGTCGCCGTCATCGGCAGCGGCATTTCAGGAGCAGTTTGCGCGTCGATTCTGGCTAAGAACGGTATTTCAGTCACCATTTTTGAGTCAGCTAGAGGTCCCGGCGGCCGCATGTCGCAGCGAAGAGAACATTGTGAGGACGGGAGAGAGCTATTGTTCGACCATGGTGCGCCGTACTTTACTTTGAACGCCAACAATTTGGAACTGCAAAGTCTAGTTAATAGCTGGGAATCAAGAGGTCTAGTGGCTCA...

Protein

4 records

下载 Protein FASTA

XP_057795209.1
MASKVAVIGSGISGAVCASILAKNGISVTIFESARGPGGRMSQRREHCEDGRELLFDHGAPYFTLNANNLELQSLVNSWESRGLVAQWKEKFGSFDYSSKSFVNVDEEVNMRYVGVPGMNSVCKALCQEPGVETRFGHGIGRSDWLMDHNTWSLTNMDGQDVGHFMGVVATDKNTFLSRFTDVTGKQPPIDLNSDSEVGFQIKEIPAFPCFALMLAFAEPLSSIPMKGGFSFKNSEILSWAHCDSSKPGRATTSERWVLH...

XP_057795210.1
MASKVAVIGSGISGAVCASILAKNGISVTIFESARGPGGRMSQRREHCEDGRELLFDHGAPYFTLNANNLELQSLVNSWESRGLVAQWKEKFGSFDYSSKSFVNVDEEVNMRYVGVPGMNSVCKALCQEPGVETRFGHGIGRSDWLMDHNTWSLTNMDGQDVGHFMGVVATDKNTFLSRFTDVTGKQPPIDSEVGFQIKEIPAFPCFALMLAFAEPLSSIPMKGGFSFKNSEILSWAHCDSSKPGRATTSERWVLHSTAK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器