当前解析结果
SmilChr02G000994| 统一新 Gene ID | SmilChr02G000994 |
|---|---|
| 名称 | SmilChr02G000994 |
| 描述 | suppressor of mec-8 and unc-52 protein homolog 1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 17458605 - 17462223 / + |
| NCBI Gene ID | LOC131011422 |
|---|---|
| GeneID | 131011422 |
| locus_tag | - |
| NCBI Name | LOC131011422 |
| 原始查询 | SmilChr02G000994 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | suppressor of mec-8 and unc-52 protein homolog 1-like |
| 产物 | suppressor of mec-8 and unc-52 protein homolog 1-like |
| Arabidopsis | AT1G73720 (SMU1)transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:843707] identity=86.2; qcov=0.952; evalue=8.46e-44; confidence=medium |
| Rice | Os01g0322800 (OsWD40-13)- identity=91.2; qcov=0.952; evalue=2.09e-47; confidence=medium |
| GO | GO:0000398 (mRNA splicing, via spliceosome); GO:0071011 (precatalytic spliceosome) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011422 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057795214.1 |
| 2 | Mitochondrion | 线粒体 | 0.60000 | XP_057795213.1 |
| 3 | Cytoplasm | 细胞质 | 0.60000 | XP_057795214.1 |
| 4 | Nucleoplasm | 核质 | 0.40000 | XP_057795214.1 |
| 5 | Mitochondrion matrix | 线粒体基质 | 0.20000 | XP_057795213.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:17459890 |
T |
TC |
1bp_insertion | frameshift_variant | 4 | A3,B124,B21,C54 |
Chr2:17459890 |
T |
TC |
1bp_insertion | CDS_variant | 4 | A3,B124,B21,C54 |
Chr2:17459893 |
T |
TA |
1bp_insertion | frameshift_variant | 4 | A3,B124,B21,C54 |
Chr2:17459893 |
T |
TA |
1bp_insertion | CDS_variant | 4 | A3,B124,B21,C54 |
Chr2:17459895 |
A |
AT |
1bp_insertion | stop_gained,frameshift_variant | 7 | A20,A25,B117,B31,B7,C12,C27 |
Chr2:17459898 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B123,C16 |
Chr2:17459899 |
C |
T |
EMS_canonical_SNV | stop_gained | 5 | B102,B103,B66,C22,C48 |
Chr2:17459899 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B102,B103,B66,C22,C48 |
Chr2:17459912 |
T |
TGG |
2bp_insertion | frameshift_variant | 16 | A9,B107,B117,B122,B129,B6,B74,B81,B85,B97,C28,C4,C53,C58,C72,D5 |
Chr2:17459926 |
C |
T |
EMS_canonical_SNV | stop_gained | 5 | B125,B90,B92,C21,C7 |
Chr2:17459926 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B125,B90,B92,C21,C7 |
Chr2:17459928 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。