当前解析结果
SmilChr02G001044| 统一新 Gene ID | SmilChr02G001044 |
|---|---|
| 名称 | SmilChr02G001044 |
| 描述 | ascorbate transporter, chloroplastic-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 18501069 - 18506418 / - |
| NCBI Gene ID | LOC131011457 |
|---|---|
| GeneID | 131011457 |
| locus_tag | - |
| NCBI Name | LOC131011457 |
| 原始查询 | SmilChr02G001044 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ascorbate transporter, chloroplastic-like |
| 产物 | ascorbate transporter%2C chloroplastic-like |
| Arabidopsis | AT4G00370 (ANTR2)Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827908] identity=66.1; qcov=1; evalue=0; confidence=high |
| Rice | Os09g0570400 (OsPT24)probable anion transporter 4, chloroplastic [Source:NCBI gene (formerly Entrezgene);Acc:4347913] identity=65.4; qcov=1; evalue=0; confidence=high |
| GO | GO:0022857 (transmembrane transporter activity); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF07690 (MFS_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011457 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057795239.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 1.00000 | XP_057795239.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057795239.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057795239.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057795239.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:18501844 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B6,C63 |
Chr2:18501895 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:18502030 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C46,C58 |
Chr2:18502711 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B131,B21 |
Chr2:18502727 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B124,B99,D7 |
Chr2:18502745 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C46,C58 |
Chr2:18503292 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
Chr2:18503293 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B124,B18,D7 |
Chr2:18503310 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A22 |
Chr2:18503437 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:18503882 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B29,C24 |
Chr2:18504894 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | B138 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057795239.1PF07690
MFS_1 211-574 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795239.1 |
Pfam | PF07690 |
MFS_1 | Family | 211 | 574 | 8.3e-59 | 200.0 | Major Facilitator Superfamily |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。