当前解析结果
SmilChr02G001064| 统一新 Gene ID | SmilChr02G001064 |
|---|---|
| 名称 | SmilChr02G001064 |
| 描述 | serine acetyltransferase 1, chloroplastic-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 18980439 - 18981660 / + |
| NCBI Gene ID | LOC131011471 |
|---|---|
| GeneID | 131011471 |
| locus_tag | - |
| NCBI Name | LOC131011471 |
| 原始查询 | SmilChr02G001064 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine acetyltransferase 1, chloroplastic-like |
| 产物 | serine acetyltransferase 1%2C chloroplastic-like |
| Arabidopsis | AT1G55920 (SERAT2;1)serine acetyltransferase 2;1 [Source:NCBI gene (formerly Entrezgene);Acc:842043] identity=67.4; qcov=0.903; evalue=8.12e-151; confidence=high |
| Rice | Os01g0720700 (OsSAT)- identity=62.2; qcov=0.763; evalue=1.55e-108; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0005829 (cytosol); GO:0006535 (GO:0006535); GO:0009001 (L-serine O-acetyltransferase activity) |
| KEGG | smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00543 (Exopolysaccharide biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00920 (Sulfur metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00132 (Hexapep); PF06426 (SATase_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011471 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057795249.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.60000 | XP_057795249.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057795249.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057795249.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057795249.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:18980476 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A4,C55,C63 |
Chr2:18980548 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr2:18980617 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | D4 |
Chr2:18980617 |
AT |
A |
1bp_deletion | CDS_variant | 1 | D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057795249.1PF06426
SATase_N 84-188 aa
PF00132
Hexapep 268-302 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795249.1 |
Pfam | PF06426 |
SATase_N | Domain | 84 | 188 | 7e-34 | 117.0 | Serine acetyltransferase, N-terminal |
XP_057795249.1 |
Pfam | PF00132 |
Hexapep | Repeat | 268 | 302 | 1.3e-13 | 50.7 | Bacterial transferase hexapeptide (six repeats) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。