当前解析结果
SmilChr02G001081| 统一新 Gene ID | SmilChr02G001081 |
|---|---|
| 名称 | SmilChr02G001081 |
| 描述 | kinesin-like protein KIN-12F |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 19348602 - 19354614 / + |
| NCBI Gene ID | LOC131011483 |
|---|---|
| GeneID | 131011483 |
| locus_tag | - |
| NCBI Name | LOC131011483 |
| 原始查询 | SmilChr02G001081 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | kinesin-like protein KIN-12F |
| 产物 | kinesin-like protein KIN-12F |
| Arabidopsis | AT3G20150 (AT3G20150)Kinesin motor family protein [Source:NCBI gene (formerly Entrezgene);Acc:821558] identity=46.4; qcov=1; evalue=0; confidence=high |
| Rice | Os03g0587200 (KIN12C)- identity=42.7; qcov=0.989; evalue=0; confidence=medium |
| GO | GO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding) |
| KEGG | smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00225 (Kinesin); PF16796 (Microtub_bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011483 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057795258.1 |
| 2 | Phragmoplast | Phragmoplast | 1.00000 | XP_057795258.1 |
| 3 | Spindle | Spindle | 0.40000 | XP_057795258.1 |
| 4 | Spindle pole | Spindle pole | 0.20000 | XP_057795258.1 |
| 5 | Cytosol | 细胞质基质 | 0.20000 | XP_057795258.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:19348764 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr2:19348778 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A18,B35,C1 |
Chr2:19348838 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B21,C55 |
Chr2:19349013 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C67 |
Chr2:19349030 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B21,C55 |
Chr2:19349524 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A20,B33,B79,C36 |
Chr2:19349525 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B90,B92 |
Chr2:19349552 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr2:19350045 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B107,B111,B35,B57,C1 |
Chr2:19351334 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B7 |
Chr2:19351944 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B131,B9,C26 |
Chr2:19351959 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B132,B53,B71,C20 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057795258.1PF00225
Kinesin 116-433 aa
PF16796
Microtub_bd 121-246 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795258.1 |
Pfam | PF00225 |
Kinesin | Domain | 116 | 433 | 3.2e-92 | 309.7 | Kinesin motor domain |
XP_057795258.1 |
Pfam | PF16796 |
Microtub_bd | Domain | 121 | 246 | 7.7e-21 | 75.3 | Microtubule binding |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。