Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G001103

染色体: Chr02 坐标: 19848898-19852362 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G001103
名称SmilChr02G001103
描述syntaxin-51-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向19848898 - 19852362 / +

ID 对照

NCBI Gene IDLOC131011500
GeneID131011500
locus_tag-
NCBI NameLOC131011500
原始查询SmilChr02G001103

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述syntaxin-51-like
产物syntaxin-51-like
ArabidopsisAT1G16240 (SYP51)
syntaxin of plants 51 [Source:NCBI gene (formerly Entrezgene);Acc:838193]
identity=70.4; qcov=1; evalue=3.29e-122; confidence=high
RiceOs08g0277900
-
identity=69.5; qcov=1; evalue=4.27e-121; confidence=high
GOGO:0000149 (SNARE binding); GO:0005484 (SNAP receptor activity); GO:0006886 (intracellular protein transport); GO:0006906 (vesicle fusion); GO:0012505 (endomembrane system); GO:0031201 (SNARE complex); GO:0048278 (GO:0048278)
KEGGsmil04130 (SNARE interactions in vesicular transport - Salvia miltiorrhiza (redroot sage))
PfamPF05739 (SNARE)
InterPro-
eggNOG-
NRGeneID:131011500

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Trans-golgi network Trans-golgi network 0.80000 XP_057795266.1
2 Vacuole 液泡 0.80000 XP_057795266.1
3 Vacuole membrane 液泡膜 0.80000 XP_057795266.1
4 Golgi apparatus 高尔基体 0.60000 XP_057795266.1
5 Nucleus 细胞核 0.00000 XP_057795266.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:19850053 C T EMS_canonical_SNV CDS_variant 3 B14,C34,C40
Chr2:19850707 C T EMS_canonical_SNV CDS_variant 2 B93,C5
Chr2:19850714 G A EMS_canonical_SNV CDS_variant 1 B25
Chr2:19850755 G A EMS_canonical_SNV CDS_variant 1 D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057795266.1
233 aa
N
1
116
233
SNARE
C
PF05739 SNARE 138-215 aa
XP_057795267.1
233 aa
N
1
116
233
SNARE
C
PF05739 SNARE 138-215 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057795266.1 Pfam PF05739 SNARE Domain 138 215 9.1e-14 51.8 SNARE domain
XP_057795267.1 Pfam PF05739 SNARE Domain 138 215 9.1e-14 51.8 SNARE domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057939284.1
CAAAAAGGAAAAAGCTAAAAACACGACAAAACAAAACAAAAAACAGTGGCATATAAATATTTTCAGTAAAAAGGGAAGGATTAGAATTTACAATAACATAGTATAATAAAATATTCCACGAGTTTTAGTAACATCCAATTTGTTCGTGTTACCAAACACAACGTTAGAATGCTGCATCAGTTGGAAGCTGAGAAAAAGCACGCTCGGAATATTAAAATGTAGATTTGTGGTGTAAACGCAATTGCCGAAGGCGACGGTTA...
XM_057939283.1
AAAACAAAAAACAGTGGCATATAAATATTTTCAGTAAAAAGGGAAGGATTAGAATTTACAATAACATAGTATAATAAAATATTCCACGAGTTTTAGTAACATCCAATTTGTTCGTGTTACCAAACACAACGTTAGAATGCTGCATCAGTTGGAAGCTGAGAAAAAGCACGCTCGGAATATTAAAATGTAGATTTGTGGTGTAAACGCAATTGCCGAAGGCGACGGTTAGGTACGACAATTTTCGCCGATAGCCGGTGGTG...

CDS

2 records

下载 CDS FASTA
LOC131011500
ATGGCAGCTTCAGGTGACGCATGGGTAAGGGAATATAATGAAGCAGTTAGACTTGCTGACGATATCACTAACATGATATCTGAAAGAAGCTCACTGCCACCTTCTGGGCCAGAATCACAGCGGCATGCATCGACCACACGGAGAAAAATTACCATATTGGGAACCAGATTGGATAGCCTGCAGTCTCTTCTGCAAAAGCTTCATGGAAAGCAATCTCTGACAGAGAAGGAAATGAATCGTCGCCGTGACATGGTAAATAA...
LOC131011500
ATGGCAGCTTCAGGTGACGCATGGGTAAGGGAATATAATGAAGCAGTTAGACTTGCTGACGATATCACTAACATGATATCTGAAAGAAGCTCACTGCCACCTTCTGGGCCAGAATCACAGCGGCATGCATCGACCACACGGAGAAAAATTACCATATTGGGAACCAGATTGGATAGCCTGCAGTCTCTTCTGCAAAAGCTTCATGGAAAGCAATCTCTGACAGAGAAGGAAATGAATCGTCGCCGTGACATGGTAAATAA...

Protein

2 records

下载 Protein FASTA
XP_057795266.1
MAASGDAWVREYNEAVRLADDITNMISERSSLPPSGPESQRHASTTRRKITILGTRLDSLQSLLQKLHGKQSLTEKEMNRRRDMVNNLRSKVTQMASALSMSNFANRDSLLGPEIKPADAMSRISGLDNQGVVGLQRQVMREQDEGLEKLEETVISTKHIALAVNEELDLHTRLIDDLDQHVEVTDSRLQRVQKRLAILNKRTKGGCSCMCLFLSVIGIVVLVAVIYMLVKYL
XP_057795267.1
MAASGDAWVREYNEAVRLADDITNMISERSSLPPSGPESQRHASTTRRKITILGTRLDSLQSLLQKLHGKQSLTEKEMNRRRDMVNNLRSKVTQMASALSMSNFANRDSLLGPEIKPADAMSRISGLDNQGVVGLQRQVMREQDEGLEKLEETVISTKHIALAVNEELDLHTRLIDDLDQHVEVTDSRLQRVQKRLAILNKRTKGGCSCMCLFLSVIGIVVLVAVIYMLVKYL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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