当前解析结果
SmilChr02G001106| 统一新 Gene ID | SmilChr02G001106 |
|---|---|
| 名称 | SmilChr02G001106 |
| 描述 | uncharacterized SmilChr02G001106 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 19896104 - 19900667 / + |
| NCBI Gene ID | LOC131008107 |
|---|---|
| GeneID | 131008107 |
| locus_tag | - |
| NCBI Name | LOC131008107 |
| 原始查询 | SmilChr02G001106 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=low |
| 产物 | hit=Os04g0191000; species=rice; confidence=low |
| Arabidopsis | ATMG00860- identity=45.2; qcov=0.131; evalue=2.3e-30; confidence=weak |
| Rice | Os04g0191000- identity=49; qcov=0.316; evalue=1.01e-82; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF03732 (PEG10_N-capsid); PF08284 (RVP_2); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF19259 (Ty3_capsid); PF24626 (SH3_Tf2-1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008107 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057790989.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057790989.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057790989.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057790989.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057790989.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:19896126 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr2:19896145 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B34 |
Chr2:19896166 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B99 |
Chr2:19896166 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B99 |
Chr2:19896170 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr2:19896171 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A6,B52,C25 |
Chr2:19896183 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
Chr2:19896209 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | B129,B74,C70 |
Chr2:19896209 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B129,B74,C70 |
Chr2:19896219 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C46,D4 |
Chr2:19896261 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B52 |
Chr2:19896261 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790989.1PF19259
Ty3_capsid 36-208 aa
PF03732
PEG10_N-capsid 37-115 aa
PF08284
RVP_2 249-275 aa
PF00078
RVT_1 400-497 aa
PF17919
RT_RNaseH_2 560-652 aa
PF17917
RT_RNaseH 587-684 aa
PF24626
SH3_Tf2-1 824-889 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790989.1 |
Pfam | PF19259 |
Ty3_capsid | Domain | 36 | 208 | 9.9e-12 | 45.4 | Ty3 transposon capsid-like protein |
XP_057790989.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 37 | 115 | 7.5e-11 | 42.9 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057790989.1 |
Pfam | PF08284 |
RVP_2 | Domain | 249 | 275 | 0.00029 | 21.4 | Retroviral aspartyl protease |
XP_057790989.1 |
Pfam | PF00078 |
RVT_1 | Domain | 400 | 497 | 2.3e-23 | 83.9 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057790989.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 560 | 652 | 1e-30 | 106.4 | RNase H-like domain found in reverse transcriptase |
XP_057790989.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 587 | 684 | 9.6e-33 | 113.2 | RNase H-like domain found in reverse transcriptase |
XP_057790989.1 |
Pfam | PF24626 |
SH3_Tf2-1 | Domain | 824 | 889 | 2.7e-27 | 95.4 | Tf2-1-like, SH3 domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。