Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001144`

染色体: Chr02 坐标: 20761415-20776007 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001144`
名称	SmilChr02G001144
描述	1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	20761415 - 20776007 / `-`

ID 对照

NCBI Gene ID	`LOC131011515`
GeneID	`131011515`
locus_tag	`-`
NCBI Name	`LOC131011515`
原始查询	`SmilChr02G001144`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic
产物	1%2C4-alpha-glucan-branching enzyme 3%2C chloroplastic/amyloplastic
Arabidopsis	`AT3G20440` (EMB2729) Alpha amylase family protein [Source:NCBI gene (formerly Entrezgene);Acc:821589] identity=69.5; qcov=1.01; evalue=0; confidence=high
Rice	`Os06g0367100` - identity=64.9; qcov=0.956; evalue=0; confidence=high
GO	GO:0003844 (1,4-alpha-glucan branching enzyme activity); GO:0005737 (cytoplasm); GO:0005978 (glycogen biosynthetic process); GO:0043169 (cation binding)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00128 (Alpha-amylase); PF02806 (Alpha-amylase_C)
InterPro	-
eggNOG	-
NR	GeneID:131011515

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057795278.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057795278.1`
3	Nucleus	细胞核	0.00000	`XP_057795278.1`
4	Chromosome	染色体	0.00000	`XP_057795278.1`
5	Centromere	着丝粒	0.00000	`XP_057795278.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:20762055`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A18,B35,C1
`Chr2:20762273`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B57,C1
`Chr2:20762303`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr2:20764422`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B29,B9,B97,C26
`Chr2:20764423`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr2:20765848`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B57
`Chr2:20765871`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B7
`Chr2:20771546`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A5,B137
`Chr2:20774583`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A18,B35,C1
`Chr2:20775027`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B57
`Chr2:20775676`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C77
`Chr2:20775676`	`TG`	`T`	1bp_deletion	CDS_variant	1	C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795278.1

900 aa

450

900

Alpha-amylase

Alpha-amylase_C

PF00128 Alpha-amylase 429-497 aa PF02806 Alpha-amylase_C 802-894 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795278.1`	Pfam	`PF00128`	Alpha-amylase	Domain	429	497	8.4e-09	35.8	Alpha amylase, catalytic domain
`XP_057795278.1`	Pfam	`PF02806`	Alpha-amylase_C	Domain	802	894	7e-17	62.3	Alpha amylase, C-terminal all-beta domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009096980.1
AAAAAAGAAGCTAGTAGTAGATAATCTTTAATCAAACATTTCGAAAATTAGGCCGTTTGTACTTTGTAGTGTCAGAGGTTTTGTTAAACCCCAGCAGCAGCAGCTGGGTTGTTCTCATCTTCCCGCGCCCTCTTATCTCCAAAATTCCACTGCCATCACATCACCATGATTTCTCTCACGCACCCACCTCAATTTCCCTCTTTCTCGATTAACTCTCCGTTCTACAACAGAAGTAACGCCGCCCACTCTACCGGCGGCGG...

XM_057939295.1
AAAATTAGGCCGTTTGTACTTTGTAGTGTCAGAGGTTTTGTTAAACCCCAGCAGCAGCAGCTGGGTTGTTCTCATCTTCCCGCGCCCTCTTATCTCCAAAATTCCACTGCCATCACATCACCATGATTTCTCTCACGCACCCACCTCAATTTCCCTCTTTCTCGATTAACTCTCCGTTCTACAACAGAAGTAACGCCGCCCACTCTACCGGCGGCGGAGTCGGCAGGAGATGCAACAGAGGCAAATGCTTCGCCGCAGAC...

CDS

1 records

下载 CDS FASTA

LOC131011515
ATGATTTCTCTCACGCACCCACCTCAATTTCCCTCTTTCTCGATTAACTCTCCGTTCTACAACAGAAGTAACGCCGCCCACTCTACCGGCGGCGGAGTCGGCAGGAGATGCAACAGAGGCAAATGCTTCGCCGCAGACCAGTCGCAAGGTCCGCGGAAGCAGTCTCAGAGACCGCGTAAAAAATCTCCTCCTCCCGATTCTGATAGAAAAGACGGAATCGATCCCGCCGGATTCCTCGCCAAGCACGGTATTGCAAATAA...

Protein

1 records

下载 Protein FASTA

XP_057795278.1
MISLTHPPQFPSFSINSPFYNRSNAAHSTGGGVGRRCNRGKCFAADQSQGPRKQSQRPRKKSPPPDSDRKDGIDPAGFLAKHGIANKAFAQFLRERYKALKDLKEELLKQYYDLQELVSGFELLGMHRNVQHRVDYMDWAPGARYCSLVGDINGWSPTENCAREGYLGHDDFGYWFVILEDKLRDGEEPDDVFFQQYNYIDDYDKGDSGVTVEEVFQKANEEYWEPGEDRFIKSRYELAAKLYEQIFGPNGPQTEEELEE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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