Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001169`

染色体: Chr02 坐标: 21445677-21452087 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001169`
名称	SmilChr02G001169
描述	uncharacterized SmilChr02G001169
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	21445677 - 21452087 / `+`

ID 对照

NCBI Gene ID	`LOC131011550`
GeneID	`131011550`
locus_tag	`-`
NCBI Name	`LOC131011550`
原始查询	`SmilChr02G001169`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNA-binding bromodomain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:835595]; symbol=AT5G55040; hit=AT5G55040; species=arabidopsis; confidence=medium
产物	DNA-binding bromodomain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:835595]; symbol=AT5G55040; hit=AT5G55040; species=arabidopsis; confidence=medium
Arabidopsis	`AT5G55040` (AT5G55040) DNA-binding bromodomain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:835595] identity=42.6; qcov=1.07; evalue=0; confidence=medium
Rice	`Os09g0550000` - identity=38.2; qcov=0.503; evalue=3.61e-70; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	smil03082 (ATP-dependent chromatin remodeling - Salvia miltiorrhiza (redroot sage))
Pfam	PF00439 (Bromodomain)
InterPro	-
eggNOG	-
NR	GeneID:131011550

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057795299.1`
2	Chromosome	染色体	0.00000	`XP_057795299.1`
3	Centromere	着丝粒	0.00000	`XP_057795299.1`
4	Chromatin	染色质	0.00000	`XP_057795299.1`
5	Telomere	端粒	0.00000	`XP_057795299.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:21446589`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B101,B37,B82
`Chr2:21447343`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr2:21449747`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B135
`Chr2:21450427`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B131,B9,C26
`Chr2:21450478`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:21450520`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A9,C32,C68
`Chr2:21450601`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A11,B57,B78
`Chr2:21450675`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr2:21450939`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A7,B2,B50,C12,C81
`Chr2:21451174`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr2:21451228`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A9,C32,C68
`Chr2:21451267`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795299.1

895 aa

448

895

Bromodomain

PF00439 Bromodomain 175-254 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795299.1`	Pfam	`PF00439`	Bromodomain	Domain	175	254	3.9e-24	85.1	Bromodomain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057939316.1
CAATATTTTATGTCCTTTTCTATTTCACCGTATAAATACAAATTCAAATGTAATAGCGCAGGGGAAACAGACACCAATTTTAGTTTGAGAAATCAATGGTGTGGTCCCCAGCCGAGAGGGACGGGACAAACGCGAGTAAGCAGGACACGCGCGGGAGATGCCGTAAGAACACGCGCCAGGGCTAATCGACAAAAGATCTGCGGGGATATAGCGCTGGGAAAAGTCAGAGACCAATTAATTGAATCACGGGCAGCCCCACG...

CDS

1 records

下载 CDS FASTA

LOC131011550
ATGGGGCAGATCGTGAAGAAGAAGAAGAAAGGCAGACCAGCGAAGGCAGATCCCGGCGGCGCCAGAGACCTGCCGCAGACGGAGCGCGACCTGCGGCGGAGCCACCGTCGCCGGAGTGTAAAGTACGTATTCGACCTCGATGACTACTTCGACGAGGACGAGGTGTTCGTGGACGACGAGGACCAGCGGCGGAGGGAAAAGAAGCTGAAGCTCCTTCTCAAGCTCCAGAGCGGCGGCGAGCCGGAACCAACTGTTCGGCG...

Protein

1 records

下载 Protein FASTA

XP_057795299.1
MGQIVKKKKKGRPAKADPGGARDLPQTERDLRRSHRRRSVKYVFDLDDYFDEDEVFVDDEDQRRREKKLKLLLKLQSGGEPEPTVRRVQHAPAASCSSDEDGGKPSKKRKIDEEMDEDLDDGNDDANEEEIYNDEDEEEVRETRRELKAEDSPPGTPAEVSCGLPLPDKKTLELILDKLQRKDIYGVYAEPVDPEELPDYFDVIDHPMDFATVRNNLRNGLYATFKQFESDVFLICSNAMQYNAPDTIYHKQARTIQELA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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