Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G001193

染色体: Chr02 坐标: 21960173-21963698 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G001193
名称SmilChr02G001193
描述uncharacterized SmilChr02G001193
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向21960173 - 21963698 / +

ID 对照

NCBI Gene IDLOC131011571
GeneID131011571
locus_tag-
NCBI NameLOC131011571
原始查询SmilChr02G001193

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述actin cytoskeleton-regulatory complex pan-like protein [Source:NCBI gene (formerly Entrezgene);Acc:841488]; symbol=AT1G50660; hit=AT1G50660; species=arabidopsis; confidence=high
产物actin cytoskeleton-regulatory complex pan-like protein [Source:NCBI gene (formerly Entrezgene);Acc:841488]; symbol=AT1G50660; hit=AT1G50660; species=arabidopsis; confidence=high
ArabidopsisAT1G50660 (AT1G50660)
actin cytoskeleton-regulatory complex pan-like protein [Source:NCBI gene (formerly Entrezgene);Acc:841488]
identity=57.4; qcov=0.999; evalue=0; confidence=high
RiceOs04g0625000
-
identity=46.3; qcov=0.95; evalue=1.39e-157; confidence=high
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131011571

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057795322.1
2 Nucleus 细胞核 0.40000 XP_057795322.1
3 Cytoskeleton 细胞骨架 0.40000 XP_057795322.1
4 Nucleus membrane 核膜 0.20000 XP_057795322.1
5 Cytosol 细胞质基质 0.20000 XP_057795323.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:21960485 G A EMS_canonical_SNV CDS_variant 2 B106,C71
Chr2:21960750 C T EMS_canonical_SNV CDS_variant 1 D10
Chr2:21962173 C T EMS_canonical_SNV CDS_variant 5 B118,B41,B61,C22,C51
Chr2:21962239 C T EMS_canonical_SNV CDS_variant 2 A18,B5
Chr2:21962647 C T EMS_canonical_SNV CDS_variant 2 B19,B77
Chr2:21962707 C T EMS_canonical_SNV CDS_variant 1 B26
Chr2:21962803 G A EMS_canonical_SNV CDS_variant 2 D10,D11
Chr2:21963036 C T EMS_canonical_SNV CDS_variant 1 B107
Chr2:21963045 G A EMS_canonical_SNV CDS_variant 2 B127,B98
Chr2:21963292 C T EMS_canonical_SNV CDS_variant 1 D11

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057939340.1
ACTATCGCTGGAGCATCAAAACGTCGCCGTCGGGATACCATGAAGCCATACGACGTCGTAGATGATACCTTTATTAGACACTCCAAACGCAATCCAACGTTTGATCTTTTGATGTAATAGAGAGCAGAAACCGTTGACCGTACAAATCTCTACTCTCTCACTCCCACCACCCAAAGATCCAAGCTCCGCCTCCGCCCTCCGTCGCCGGAAAACGCTCCAAGATCCAGCATTTGGAGTTTGGCTCTGCAAAACGAGGTTAA...
XM_057939339.1
ACGCAATCCAACGTTTGATCTTTTGATGTAATAGAGAGCAGAAACCGTTGACCGTACAAATCTCTACTCTCTCACTCCCACCACCCAAAGATCCAAGCTCCGCCTCCGCCCTCCGTCGCCGGAAAACGCTCCAAGATCCAGCATTTGGAGTTTGGCTCTGCAAAACGAGGTTAATTTGAAGGGTTTATGCAAATGGGGCAGCCTGGAAGATGAAGGTAACGATAGAGAAAGGTGTGGGCCAACAAATCCAGCAGCCCACT...

CDS

2 records

下载 CDS FASTA
LOC131011571
ATGAAGGTAACGATAGAGAAAGGTGTGGGCCAACAAATCCAGCAGCCCACTCGAAACCCTCCGCCGCCCTCAGATCTTCCAGAGAAGCCCGGTTTTCCTCCGCGCAAGCCGCCGCGCCGCAAGACCCGGCCCGGGGTCCGGTTGAGGAGGGAATCCGGAGCTCCGACTGCGAAGCGGAGCAGCCGACCCGAGACCCCTTTGCTTAGGTGGAAGTTCGATGAAGGCAATCAGAAGAATGTAGCTGTGGATGAGGAGGTGGA...
LOC131011571
ATGAAGGTAACGATAGAGAAAGGTGTGGGCCAACAAATCCAGCAGCCCACTCGAAACCCTCCGCCGCCCTCAGATCTTCCAGAGAAGCCCGGTTTTCCTCCGCGCAAGCCGCCGCGCCGCAAGACCCGGCCCGGGGTCCGGTTGAGGAGGGAATCCGGAGCTCCGACTGCGAAGCGGAGCAGCCGACCCGAGACCCCTTTGCTTAGGTGGAAGTTCGATGAAGGCAATCAGAAGAATGTAGCTGTGGATGAGGAGGTGGA...

Protein

2 records

下载 Protein FASTA
XP_057795322.1
MKVTIEKGVGQQIQQPTRNPPPPSDLPEKPGFPPRKPPRRKTRPGVRLRRESGAPTAKRSSRPETPLLRWKFDEGNQKNVAVDEEVEEAGEPGRRRNRSGVSSRKLAAGLWRLRLAELQDNVAQGGVGLQSGGGHFGASIHCRDADRVHRSPAEDPDSPHSVSGPKHGLLYKTLNTFYSEIENPLYTMQFEPSFQFPNYAMEGATKWDPDGWKASDEVKQIFSQTKPNNDHRASSAKVISALEAELEQARTRINELETDR...
XP_057795323.1
MKVTIEKGVGQQIQQPTRNPPPPSDLPEKPGFPPRKPPRRKTRPGVRLRRESGAPTAKRSSRPETPLLRWKFDEGNQKNVAVDEEVEEAGEPGRRRNRSGVSSRKLAAGLWRLRLAELQDNVAQGGVGLQSGGGHFGASIHCRDADRVHRSPAEDPDSPHSVSGPKHGLLYKFEPSFQFPNYAMEGATKWDPDGWKASDEVKQIFSQTKPNNDHRASSAKVISALEAELEQARTRINELETDRRSSKKKLEQFLRKLSEE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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