当前解析结果
SmilChr02G001206| 统一新 Gene ID | SmilChr02G001206 |
|---|---|
| 名称 | SmilChr02G001206 |
| 描述 | purple acid phosphatase 18 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 22234574 - 22237833 / + |
| NCBI Gene ID | LOC131011581 |
|---|---|
| GeneID | 131011581 |
| locus_tag | - |
| NCBI Name | LOC131011581 |
| 原始查询 | SmilChr02G001206 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | purple acid phosphatase 18 |
| 产物 | purple acid phosphatase 18 |
| Arabidopsis | AT3G20500 (PAP18)purple acid phosphatase 18 [Source:NCBI gene (formerly Entrezgene);Acc:821596] identity=76.3; qcov=0.991; evalue=0; confidence=high |
| Rice | Os03g0568900 (OsPAP18)- identity=70.5; qcov=0.982; evalue=0; confidence=high |
| GO | GO:0003993 (acid phosphatase activity); GO:0046872 (metal ion binding) |
| KEGG | - |
| Pfam | PF00149 (Metallophos); PF14008 (Metallophos_C); PF16656 (Pur_ac_phosph_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011581 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.80000 | XP_057795337.1 |
| 2 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057795337.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057795337.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057795337.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057795337.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:22235031 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
Chr2:22235903 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B121,B15,B89,C80 |
Chr2:22236016 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B57 |
Chr2:22236050 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B121,B15,B89,C80 |
Chr2:22236134 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B32,C71 |
Chr2:22236313 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B119 |
Chr2:22236314 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B121,B15,B89,C80 |
Chr2:22236353 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr2:22236486 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B3,B59,C77 |
Chr2:22236807 |
G |
GA |
1bp_insertion | frameshift_variant | 2 | B80,C9 |
Chr2:22236807 |
G |
GA |
1bp_insertion | CDS_variant | 2 | B80,C9 |
Chr2:22236818 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057795337.1PF16656
Pur_ac_phosph_N 46-133 aa
PF00149
Metallophos 141-331 aa
PF14008
Metallophos_C 347-404 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795337.1 |
Pfam | PF16656 |
Pur_ac_phosph_N | Domain | 46 | 133 | 1.5e-22 | 80.7 | Purple acid Phosphatase, N-terminal domain |
XP_057795337.1 |
Pfam | PF00149 |
Metallophos | Domain | 141 | 331 | 3.3e-18 | 67.6 | Calcineurin-like phosphoesterase |
XP_057795337.1 |
Pfam | PF14008 |
Metallophos_C | Domain | 347 | 404 | 1.3e-22 | 80.9 | Iron/zinc purple acid phosphatase-like protein C |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。