Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001229`

染色体: Chr02 坐标: 22584075-22589524 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001229`
名称	SmilChr02G001229
描述	microtubule-associated protein TORTIFOLIA1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	22584075 - 22589524 / `-`

ID 对照

NCBI Gene ID	`LOC131011603`
GeneID	`131011603`
locus_tag	`-`
NCBI Name	`LOC131011603`
原始查询	`SmilChr02G001229`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	microtubule-associated protein TORTIFOLIA1-like
产物	microtubule-associated protein TORTIFOLIA1-like
Arabidopsis	`AT4G27060` (TOR1) ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828814] identity=54; qcov=1.03; evalue=0; confidence=high
Rice	`Os07g0520400` (OJ1793_E11.120) - identity=51.2; qcov=1.01; evalue=0; confidence=high
GO	GO:0007275 (multicellular organism development); GO:0008017 (microtubule binding); GO:0009826 (unidimensional cell growth); GO:0010005 (cortical microtubule, transverse to long axis); GO:0010031 (circumnutation)
KEGG	-
Pfam	PF23271 (HEAT_GCN1); PF24713 (TOR1L1_C); PF24714 (TOR1L1_N)
InterPro	-
eggNOG	-
NR	GeneID:131011603

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057795353.1`
2	Nucleus	细胞核	0.20000	`XP_057795353.1`
3	Chromosome	染色体	0.00000	`XP_057795353.1`
4	Centromere	着丝粒	0.00000	`XP_057795353.1`
5	Chromatin	染色质	0.00000	`XP_057795353.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:22585292`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B32,C71
`Chr2:22585659`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B118,B41,B61,C22,C51
`Chr2:22585743`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B112
`Chr2:22586016`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr2:22586017`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr2:22586273`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B131,B9,C26,C41
`Chr2:22587957`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A19,B57,B74,D10
`Chr2:22588041`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B64
`Chr2:22588073`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B64,B8
`Chr2:22588093`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C56,C65
`Chr2:22588522`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B57
`Chr2:22588522`	`TC`	`T`	1bp_deletion	CDS_variant	1	B57

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795353.1

878 aa

439

878

HEAT_GCN1

TOR1L1_N

TOR1L1_C

PF23271 HEAT_GCN1 26-144 aa PF24714 TOR1L1_N 36-311 aa PF24713 TOR1L1_C 736-869 aa

XP_057795354.1

878 aa

439

878

HEAT_GCN1

TOR1L1_N

TOR1L1_C

PF23271 HEAT_GCN1 26-144 aa PF24714 TOR1L1_N 36-311 aa PF24713 TOR1L1_C 736-869 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795353.1`	Pfam	`PF23271`	HEAT_GCN1	Repeat	26	144	3.5e-10	41.0	Stalled ribosome sensor GCN1-like, HEAT repeats
`XP_057795353.1`	Pfam	`PF24714`	TOR1L1_N	Repeat	36	311	1.5e-117	392.6	TORTIFOLIA1 N-terminal
`XP_057795353.1`	Pfam	`PF24713`	TOR1L1_C	Repeat	736	869	3.5e-64	215.6	TORTIFOLIA1 C-terminal
`XP_057795354.1`	Pfam	`PF23271`	HEAT_GCN1	Repeat	26	144	3.5e-10	41.0	Stalled ribosome sensor GCN1-like, HEAT repeats
`XP_057795354.1`	Pfam	`PF24714`	TOR1L1_N	Repeat	36	311	1.5e-117	392.6	TORTIFOLIA1 N-terminal
`XP_057795354.1`	Pfam	`PF24713`	TOR1L1_C	Repeat	736	869	3.5e-64	215.6	TORTIFOLIA1 C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057939371.1
AGTAAATCTTTTTTAAAAATGTAAAGCAAGATTAATCTTTTACGTCTGAAAAAAAACACAGAAGTAGAAGTAGAAGTAGCAGCAGCAGCAGCTCCCATCTCAATTCTGTGTTGGTGGTGGTGGTGGCCACAGATCTCACATTCCTCTCTCATTTTGCTTTCATTCTCAGTAAAACCCCACTCCCATTCATACATCGCACCTTAATTCTCAAATCTCAATTCCACCCTTTCCCTCTTCAACGGCTTTCAAATTCCCTCATT...

XM_057939370.1
CAAATGGGAATCAACCCTAATAGTAAATCTTTTTTAAAAATGTAAAGCAAGATTAATCTTTTACGTCTGAAAAAAAACACAGAAGTAGAAGTAGAAGTAGCAGCAGCAGCAGCTCCCATCTCAATTCTGTGTTGGTGGTGGTGGTGGCCACAGATCTCACATTCCTCTCTCATTTTGCTTTCATTCTCAGTAAAACCCCACTCCCATTCATACATCGCACCTTAATTCTCAAATCTCAATTCCACCCTTTCCCTCTTCAA...

CDS

2 records

下载 CDS FASTA

LOC131011603
ATGAGTTCGCAGAGATCTGCAAAACCCTCGAAACCCCCCAACCAAACCCCAACCAGATCATCCTCCACCACCTCATCGTCTTCCCTCTCATCCCACCTGGCAATGGTGGAGCTCAAGCAGCGCATTCTCACTTCCCTCTCCAAGCTCGCCGACCGCGACACCCACCAGATCGCCGTCGAGGACCTCGAGAAGATCATCCAGTCCCTCACCAACGACGGCGTCTCGATGCTGCTCAACTGCCTCTACGAAGCCGTCAACGA...

Protein

2 records

下载 Protein FASTA

XP_057795353.1
MSSQRSAKPSKPPNQTPTRSSSTTSSSSLSSHLAMVELKQRILTSLSKLADRDTHQIAVEDLEKIIQSLTNDGVSMLLNCLYEAVNDPKPPSKKEGVRLLAALCAAHTDAAATHLTKIIAHIVKRLKDSDSQVRDACRDAIGALSGLYLKGGSGGDGVVSLFMKPLFEVMSENNKAAQGGAALCLAKMVECASDPPLGTFQKLCVRVCKYLNSPNFMAKASLLQVVSSLSQVGAITPQNLESLLQSIQECLNSSDWATRK...

XP_057795354.1
MSSQRSAKPSKPPNQTPTRSSSTTSSSSLSSHLAMVELKQRILTSLSKLADRDTHQIAVEDLEKIIQSLTNDGVSMLLNCLYEAVNDPKPPSKKEGVRLLAALCAAHTDAAATHLTKIIAHIVKRLKDSDSQVRDACRDAIGALSGLYLKGGSGGDGVVSLFMKPLFEVMSENNKAAQGGAALCLAKMVECASDPPLGTFQKLCVRVCKYLNSPNFMAKASLLQVVSSLSQVGAITPQNLESLLQSIQECLNSSDWATRK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器