当前解析结果
SmilChr02G001246| 统一新 Gene ID | SmilChr02G001246 |
|---|---|
| 名称 | SmilChr02G001246 |
| 描述 | rab GTPase-activating protein 22-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 22897350 - 22900409 / - |
| NCBI Gene ID | LOC131011619 |
|---|---|
| GeneID | 131011619 |
| locus_tag | - |
| NCBI Name | LOC131011619 |
| 原始查询 | SmilChr02G001246 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | rab GTPase-activating protein 22-like |
| 产物 | rab GTPase-activating protein 22-like |
| Arabidopsis | AT4G27100 (AT4G27100)Ypt/Rab-GAP domain of gyp1p superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828818] identity=48.8; qcov=0.601; evalue=7.75e-20; confidence=low |
| Rice | Os07g0525400- identity=50; qcov=0.643; evalue=4.35e-21; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011619 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057795374.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057795376.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057795378.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057795374.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057795374.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:22897620 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr2:22897664 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C81 |
Chr2:22897767 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B19,B42 |
Chr2:22897767 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B19,B42 |
Chr2:22897829 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B103,B21,B37 |
Chr2:22897851 |
TG |
T |
1bp_deletion | frameshift_variant | 14 | A8,B120,B25,B38,B39,B58,B68,B97,C13,C19,C54,C59,C70,D9 |
Chr2:22897854 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B106,C71 |
Chr2:22897871 |
C |
T |
EMS_canonical_SNV | stop_gained | 8 | B134,B18,B61,B81,B85,C15,C55,C61 |
Chr2:22899691 |
C |
T |
EMS_canonical_SNV | stop_gained | 14 | A20,A25,B110,B132,B45,B63,B95,C10,C15,C34,C53,C63,C7,C70 |
Chr2:22899701 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C55 |
Chr2:22899754 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr2:22899761 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
6 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。