当前解析结果
SmilChr02G001261| 统一新 Gene ID | SmilChr02G001261 |
|---|---|
| 名称 | SmilChr02G001261 |
| 描述 | uncharacterized SmilChr02G001261 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 23119586 - 23122429 / + |
| NCBI Gene ID | LOC131011630 |
|---|---|
| GeneID | 131011630 |
| locus_tag | - |
| NCBI Name | LOC131011630 |
| 原始查询 | SmilChr02G001261 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Transport protein particle (TRAPP) component [Source:NCBI gene (formerly Entrezgene);Acc:835565]; symbol=AT5G54750; hit=AT5G54750; species=arabidopsis; confidence=high |
| 产物 | Transport protein particle (TRAPP) component [Source:NCBI gene (formerly Entrezgene);Acc:835565]; symbol=AT5G54750; hit=AT5G54750; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G54750 (AT5G54750)Transport protein particle (TRAPP) component [Source:NCBI gene (formerly Entrezgene);Acc:835565] identity=86.6; qcov=1; evalue=1.27e-123; confidence=high |
| Rice | Os07g0642300 (P0524G08.123)- identity=85; qcov=1; evalue=5.72e-121; confidence=high |
| GO | GO:0005829 (cytosol); GO:0006888 (endoplasmic reticulum to Golgi vesicle-mediated transport); GO:0006891 (intra-Golgi vesicle-mediated transport); GO:0030008 (TRAPP complex); GO:0033106 (cis-Golgi network membrane) |
| KEGG | - |
| Pfam | PF04051 (TRAPP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011630 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057795384.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057795384.1 |
| 3 | Nucleoplasm | 核质 | 0.60000 | XP_057795384.1 |
| 4 | Nucleus | 细胞核 | 0.40000 | XP_057795384.1 |
| 5 | Vesicle | 囊泡 | 0.20000 | XP_057795384.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:23119773 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:23119775 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B129,B91 |
Chr2:23122148 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr2:23122166 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A23,B19,B21,B77,C5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057795384.1PF04051
TRAPP 24-171 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795384.1 |
Pfam | PF04051 |
TRAPP | Family | 24 | 171 | 2.3e-43 | 148.3 | Transport protein particle (TRAPP) component |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。