当前解析结果
SmilChr02G001311| 统一新 Gene ID | SmilChr02G001311 |
|---|---|
| 名称 | SmilChr02G001311 |
| 描述 | uncharacterized SmilChr02G001311 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 24341578 - 24343361 / + |
| NCBI Gene ID | LOC131007791 |
|---|---|
| GeneID | 131007791 |
| locus_tag | - |
| NCBI Name | LOC131007791 |
| 原始查询 | SmilChr02G001311 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc finger protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:835552]; symbol=AT5G54630; hit=AT5G54630; species=arabidopsis; confidence=high |
| 产物 | zinc finger protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:835552]; symbol=AT5G54630; hit=AT5G54630; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G54630 (AT5G54630)zinc finger protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:835552] identity=59.4; qcov=1.16; evalue=8.4e-171; confidence=high |
| Rice | Os01g0785900- identity=58.9; qcov=1.16; evalue=3.38e-170; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007791 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057790691.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057790691.1 |
| 3 | Cell membrane | 细胞膜 | 0.40000 | XP_057790691.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057790691.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057790691.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:24342094 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A5,B137,B93,C49,D4 |
Chr2:24342331 |
C |
CCG |
2bp_insertion | frameshift_variant | 49 | A10,A11,A21,B101,B108,B11,B113,B114,B119,B124,B133,B135,B136,B139,B16,B17,B22,B26,B27,B29,B31,B37,B4,B44,B48,B6,B62,B75,B78,B82,B84,B89,C12,C18,C21,C30,C31,C40,C41,C44,C52,C6,C67,C73,C74,C79,C80,C87,D8 |
Chr2:24342335 |
C |
CT |
1bp_insertion | frameshift_variant | 13 | A1,A19,B131,B14,B20,B41,B74,B9,C26,C27,C43,C46,C83 |
Chr2:24342345 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr2:24342519 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B129,B91 |
Chr2:24342623 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:24342634 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A13,B101,B40,C22,C85 |
Chr2:24342675 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B101,B40,B54,B74,B79 |
Chr2:24342808 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A13,B101,B40,C22,C36 |
Chr2:24342847 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B76,B93 |
Chr2:24342952 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A7,B49 |
Chr2:24342966 |
GA |
G |
1bp_deletion | frameshift_variant | 2 | A11,B78 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。