当前解析结果
SmilChr02G001334| 统一新 Gene ID | SmilChr02G001334 |
|---|---|
| 名称 | SmilChr02G001334 |
| 描述 | protein gamma response 1 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 24805271 - 24808516 / + |
| NCBI Gene ID | LOC131007810 |
|---|---|
| GeneID | 131007810 |
| locus_tag | - |
| NCBI Name | LOC131007810 |
| 原始查询 | SmilChr02G001334 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein gamma response 1 |
| 产物 | protein gamma response 1 |
| Arabidopsis | AT3G52115 (GR1)protein gamma response 1 [Source:NCBI gene (formerly Entrezgene);Acc:824375] identity=36.8; qcov=0.754; evalue=4.05e-71; confidence=medium |
| Rice | Os06g0613400 (OsCOM1)- identity=41.7; qcov=0.561; evalue=2.81e-69; confidence=medium |
| GO | GO:0000403 (Y-form DNA binding); GO:0000406 (double-strand/single-strand DNA junction binding); GO:0000724 (double-strand break repair via homologous recombination); GO:0003684 (damaged DNA binding); GO:0003690 (double-stranded DNA binding); GO:0003697 (single-stranded DNA binding); GO:0010792 (DNA double-strand break processing involved in repair via single-strand annealing); GO:0035861 (site of double-strand break); GO:0070336 (flap-structured DNA binding) |
| KEGG | - |
| Pfam | PF08573 (SAE2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007810 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057790707.1 |
| 2 | Chromosome | 染色体 | 0.60000 | XP_057790707.1 |
| 3 | Nucleoplasm | 核质 | 0.60000 | XP_057790707.1 |
| 4 | Centromere | 着丝粒 | 0.20000 | XP_057790707.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057790707.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:24806316 |
TG |
T |
1bp_deletion | frameshift_variant | 5 | B120,C30,C39,C53,C85 |
Chr2:24806316 |
TG |
T |
1bp_deletion | CDS_variant | 5 | B120,C30,C39,C53,C85 |
Chr2:24806368 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B76,C49 |
Chr2:24806372 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B76,C49 |
Chr2:24806419 |
AGG |
A |
2bp_deletion | frameshift_variant | 45 | A1,A14,A15,A2,A20,A21,A23,A4,B105,B106,B107,B132,B136,B18,B26,B35,B41,B47,B55,B60,B66,B74,B77,B83,B85,B87,C11,C13,C28,C30,C36,C45,C49,C52,C53,C7,C72,C8,C81,C85,C86,D1,D6,D7,D8 |
Chr2:24806546 |
A |
AG |
1bp_insertion | frameshift_variant | 9 | B101,B108,B21,B22,B36,B64,B90,B92,C31 |
Chr2:24806567 |
G |
GA |
1bp_insertion | frameshift_variant | 176 | A1,A15,A16,A18,A19,A2,A20,A21,A23,A24,A5,A6,A7,A8,B1,B10,B100,B101,B102,B103,B104,B105,B106,B108,B109,B11,B112,B115,B118,B119,B12,B120,B121,B124,B125,B126,B127,B128,B129,B13,B130,B132,B133,B134,B135,B137,B138,B139,B14,B140,B15,B16,B17,B2,B21,B22,B25,B27,B28,B29,B3,B30,B31,B32,B33,B35,B36,B38,B39,B41,B42,B43,B45,B46,B47,B48,B49,B5,B50,B52,B53,B54,B55,B56,B57,B59,B60,B61,B63,B64,B65,B66,B67,B68,B69,B71,B72,B75,B76,B77,B79,B84,B86,B87,B88,B89,B9,B90,B91,B92,B94,B95,B96,B99,C1,C10,C12,C13,C14,C15,C21,C23,C24,C26,C27,C28,C29,C3,C31,C32,C33,C34,C37,C38,C39,C4,C41,C42,C43,C45,C47,C48,C49,C5,C50,C51,C54,C55,C56,C57,C59,C6,C60,C61,C62,C63,C64,C66,C67,C68,C70,C71,C74,C77,C78,C79,C84,C86,C87,D1,D10,D11,D2,D3,D4,D9 |
Chr2:24806584 |
TGG |
T |
2bp_deletion | frameshift_variant | 2 | B132,D10 |
Chr2:24806584 |
TGG |
T |
2bp_deletion | CDS_variant | 2 | B132,D10 |
Chr2:24806588 |
G |
GAA |
2bp_insertion | frameshift_variant | 1 | B132 |
Chr2:24806588 |
G |
GAA |
2bp_insertion | CDS_variant | 1 | B132 |
Chr2:24806595 |
AC |
A |
1bp_deletion | frameshift_variant | 169 | A1,A15,A16,A18,A19,A2,A20,A21,A23,A24,A5,A6,A7,A8,B1,B10,B100,B101,B102,B103,B105,B106,B108,B109,B11,B115,B118,B12,B120,B121,B124,B125,B126,B127,B128,B129,B13,B130,B132,B133,B135,B138,B139,B14,B140,B15,B16,B17,B2,B21,B22,B25,B27,B28,B29,B3,B30,B31,B32,B33,B35,B36,B38,B39,B41,B42,B43,B45,B46,B47,B48,B49,B5,B50,B52,B53,B54,B55,B56,B57,B59,B60,B61,B63,B64,B65,B66,B67,B69,B71,B72,B75,B76,B77,B79,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B94,B95,B96,B99,C1,C10,C12,C13,C14,C15,C21,C23,C24,C26,C27,C28,C29,C3,C31,C32,C33,C34,C37,C38,C39,C4,C41,C42,C45,C47,C48,C49,C5,C50,C51,C54,C55,C56,C57,C59,C6,C61,C62,C63,C64,C66,C67,C68,C70,C71,C74,C77,C78,C79,C84,C86,C87,D1,D10,D11,D2,D3,D4,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790707.1PF08573
SAE2 668-704 aa
XP_057790708.1PF08573
SAE2 668-704 aa
XP_057790709.1PF08573
SAE2 649-685 aa
XP_057790710.1PF08573
SAE2 649-685 aa
XP_057790711.1PF08573
SAE2 566-614 aa
PF08573
SAE2 602-638 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790707.1 |
Pfam | PF08573 |
SAE2 | Domain | 668 | 704 | 7.7e-08 | 34.1 | DNA endonuclease activator SAE2/CtIP C-terminus |
XP_057790708.1 |
Pfam | PF08573 |
SAE2 | Domain | 668 | 704 | 7.7e-08 | 34.1 | DNA endonuclease activator SAE2/CtIP C-terminus |
XP_057790709.1 |
Pfam | PF08573 |
SAE2 | Domain | 649 | 685 | 7e-08 | 34.2 | DNA endonuclease activator SAE2/CtIP C-terminus |
XP_057790710.1 |
Pfam | PF08573 |
SAE2 | Domain | 649 | 685 | 7e-08 | 34.2 | DNA endonuclease activator SAE2/CtIP C-terminus |
XP_057790711.1 |
Pfam | PF08573 |
SAE2 | Domain | 566 | 614 | 5.5e-08 | 34.6 | DNA endonuclease activator SAE2/CtIP C-terminus |
XP_057790711.1 |
Pfam | PF08573 |
SAE2 | Domain | 602 | 638 | 5.5e-08 | 34.6 | DNA endonuclease activator SAE2/CtIP C-terminus |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。