当前解析结果
SmilChr02G001342| 统一新 Gene ID | SmilChr02G001342 |
|---|---|
| 名称 | SmilChr02G001342 |
| 描述 | uncharacterized SmilChr02G001342 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 24995595 - 24998041 / - |
| NCBI Gene ID | LOC131007818 |
|---|---|
| GeneID | 131007818 |
| locus_tag | - |
| NCBI Name | LOC131007818 |
| 原始查询 | SmilChr02G001342 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Uncharacterized conserved protein (UCP012943) [Source:NCBI gene (formerly Entrezgene);Acc:835542]; symbol=AT5G54540; hit=AT5G54540; species=arabidopsis; confidence=low |
| 产物 | Uncharacterized conserved protein (UCP012943) [Source:NCBI gene (formerly Entrezgene);Acc:835542]; symbol=AT5G54540; hit=AT5G54540; species=arabidopsis; confidence=low |
| Arabidopsis | AT5G54540 (AT5G54540)Uncharacterized conserved protein (UCP012943) [Source:NCBI gene (formerly Entrezgene);Acc:835542] identity=33.6; qcov=0.833; evalue=1.95e-30; confidence=low |
| Rice | Os08g0179900- identity=28.5; qcov=0.814; evalue=2.18e-19; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF27707 (UCP012943) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007818 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 0.60000 | XP_057790718.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 0.60000 | XP_057790718.1 |
| 3 | Peroxisome | 过氧化物酶体 | 0.40000 | XP_057790718.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057790718.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057790718.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:24995830 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
Chr2:24995856 |
TG |
T |
1bp_deletion | frameshift_variant | 2 | B16,B34 |
Chr2:24995856 |
TG |
T |
1bp_deletion | CDS_variant | 2 | B16,B34 |
Chr2:24996623 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr2:24996676 |
AG |
A |
1bp_deletion | frameshift_variant | 3 | B115,B126,D4 |
Chr2:24996676 |
AG |
A |
1bp_deletion | CDS_variant | 3 | B115,B126,D4 |
Chr2:24996677 |
G |
GT |
1bp_insertion | frameshift_variant | 17 | A1,A11,B110,B139,B14,B19,B60,B63,B96,C2,C35,C41,C50,C66,C75,C84,D6 |
Chr2:24996730 |
AT |
A |
1bp_deletion | frameshift_variant | 24 | A24,B11,B110,B112,B123,B15,B18,B24,B25,B35,B67,B68,B69,B70,B92,B93,C21,C37,C4,C58,C64,C68,C87,D5 |
Chr2:24996737 |
AC |
A |
1bp_deletion | frameshift_variant | 23 | A24,A7,B11,B110,B112,B123,B15,B18,B24,B67,B68,B70,B92,B93,C21,C23,C37,C4,C58,C64,C68,C87,D5 |
Chr2:24997604 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr2:24997621 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:24997647 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B129,B91 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057790718.1PF27707
UCP012943 86-304 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790718.1 |
Pfam | PF27707 |
UCP012943 | Family | 86 | 304 | 1.2e-27 | 97.7 | Uncharacterised conserved protein UCP012943 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。