当前解析结果
SmilChr02G001360| 统一新 Gene ID | SmilChr02G001360 |
|---|---|
| 名称 | SmilChr02G001360 |
| 描述 | uncharacterized SmilChr02G001360 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 25433017 - 25435295 / - |
| NCBI Gene ID | LOC131008188 |
|---|---|
| GeneID | 131008188 |
| locus_tag | - |
| NCBI Name | LOC131008188 |
| 原始查询 | SmilChr02G001360 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693]; symbol=AT2G06105; hit=AT2G06105; species=arabidopsis; confidence=weak |
| 产物 | aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693]; symbol=AT2G06105; hit=AT2G06105; species=arabidopsis; confidence=weak |
| Arabidopsis | AT2G06105 (AT2G06105)aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693] identity=37.5; qcov=0.097; evalue=2.4e-06; confidence=weak |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008188 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057791064.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057791064.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057791064.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.20000 | XP_057791064.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057791064.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:25433018 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B28 |
Chr2:25433027 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B28,D11 |
Chr2:25433031 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr2:25433038 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A20,B33,B79,C36,C82 |
Chr2:25433039 |
AT |
A |
1bp_deletion | frameshift_variant | 2 | B10,B111 |
Chr2:25433039 |
AT |
A |
1bp_deletion | CDS_variant | 2 | B10,B111 |
Chr2:25433046 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr2:25433067 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr2:25433076 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B87,B96 |
Chr2:25433082 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B125 |
Chr2:25433097 |
G |
A |
EMS_canonical_SNV | stop_gained | 22 | A15,A18,B105,B107,B122,B128,B20,B32,B33,B39,B71,B89,B90,C2,C20,C21,C23,C26,C48,C5,C65,C76 |
Chr2:25433112 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B28,B57,C30,C51,C7 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。