当前解析结果
SmilChr02G001370| 统一新 Gene ID | SmilChr02G001370 |
|---|---|
| 名称 | SmilChr02G001370 |
| 描述 | uncharacterized SmilChr02G001370 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 25956308 - 25960261 / - |
| NCBI Gene ID | LOC131008194 |
|---|---|
| GeneID | 131008194 |
| locus_tag | - |
| NCBI Name | LOC131008194 |
| 原始查询 | SmilChr02G001370 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=weak |
| 产物 | hit=Os08g0202300; species=rice; confidence=weak |
| Arabidopsis | ATMG00860- identity=28.5; qcov=0.099; evalue=1.37e-09; confidence=weak |
| Rice | Os08g0202300- identity=32.4; qcov=0.284; evalue=1.03e-56; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008194 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057791069.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057791069.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057791069.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791069.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791069.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:25956342 |
C |
T |
EMS_canonical_SNV | stop_gained | 15 | A16,A20,B115,B121,B123,B136,B18,B19,B47,C21,C39,C41,C54,C55,C57 |
Chr2:25956345 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr2:25956348 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B95,C46 |
Chr2:25956358 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr2:25956359 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
Chr2:25956361 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B2,B22,B39,B75,C4 |
Chr2:25956362 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B140,C35,C56,C83 |
Chr2:25956363 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr2:25956376 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B76,C20,C28 |
Chr2:25956379 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr2:25956387 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B119,B131 |
Chr2:25956390 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C3,C48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791069.1PF00078
RVT_1 376-535 aa
PF17919
RT_RNaseH_2 598-696 aa
PF17917
RT_RNaseH 641-725 aa
PF13456
RVT_3 760-877 aa
PF17921
Integrase_H2C2 968-1019 aa
PF00665
rve 1035-1132 aa
PF31073
DUF8803 1257-1316 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791069.1 |
Pfam | PF00078 |
RVT_1 | Domain | 376 | 535 | 3.1e-32 | 112.8 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057791069.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 598 | 696 | 5.9e-16 | 59.1 | RNase H-like domain found in reverse transcriptase |
XP_057791069.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 641 | 725 | 4.1e-09 | 37.2 | RNase H-like domain found in reverse transcriptase |
XP_057791069.1 |
Pfam | PF13456 |
RVT_3 | Domain | 760 | 877 | 1.1e-16 | 61.6 | Reverse transcriptase-like |
XP_057791069.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 968 | 1019 | 9.9e-10 | 39.1 | Integrase zinc binding domain |
XP_057791069.1 |
Pfam | PF00665 |
rve | Domain | 1035 | 1132 | 1.3e-15 | 58.2 | Integrase core domain |
XP_057791069.1 |
Pfam | PF31073 |
DUF8803 | Domain | 1257 | 1316 | 4.4e-23 | 81.6 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。