当前解析结果
SmilChr02G001378| 统一新 Gene ID | SmilChr02G001378 |
|---|---|
| 名称 | SmilChr02G001378 |
| 描述 | uncharacterized SmilChr02G001378 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 26062376 - 26064595 / + |
| NCBI Gene ID | LOC131008197 |
|---|---|
| GeneID | 131008197 |
| locus_tag | - |
| NCBI Name | LOC131008197 |
| 原始查询 | SmilChr02G001378 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=weak |
| 产物 | hit=Os08g0202300; species=rice; confidence=weak |
| Arabidopsis | AT3G01410 (AT3G01410)Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821319] identity=40.8; qcov=0.173; evalue=2.54e-12; confidence=weak |
| Rice | Os08g0202300- identity=28.6; qcov=0.284; evalue=2.13e-15; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00075 (RNase_H); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008197 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057791071.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057791071.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057791071.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791071.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791071.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:26062387 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B65,B89,D7 |
Chr2:26062392 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A11,B46,B78 |
Chr2:26062393 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B118,B41,B61,C29,C51 |
Chr2:26062397 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr2:26062398 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr2:26062409 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A13,B101 |
Chr2:26062411 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B65,B89,C10,D7 |
Chr2:26062433 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C3 |
Chr2:26062543 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B139,B53,C58 |
Chr2:26062556 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr2:26062557 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B19 |
Chr2:26062577 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791071.1PF17919
RT_RNaseH_2 111-209 aa
PF17917
RT_RNaseH 141-238 aa
PF00075
RNase_H 287-362 aa
PF13456
RVT_3 290-407 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791071.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 111 | 209 | 2e-23 | 83.0 | RNase H-like domain found in reverse transcriptase |
XP_057791071.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 141 | 238 | 8.2e-19 | 68.4 | RNase H-like domain found in reverse transcriptase |
XP_057791071.1 |
Pfam | PF00075 |
RNase_H | Domain | 287 | 362 | 1.3e-06 | 29.3 | RNase H |
XP_057791071.1 |
Pfam | PF13456 |
RVT_3 | Domain | 290 | 407 | 1.1e-17 | 64.8 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。