当前解析结果
SmilChr02G001383| 统一新 Gene ID | SmilChr02G001383 |
|---|---|
| 名称 | SmilChr02G001383 |
| 描述 | uncharacterized SmilChr02G001383 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 26190173 - 26233315 / - |
| NCBI Gene ID | LOC131008198 |
|---|---|
| GeneID | 131008198 |
| locus_tag | - |
| NCBI Name | LOC131008198 |
| 原始查询 | SmilChr02G001383 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | folic acid binding / transferase [Source:NCBI gene (formerly Entrezgene);Acc:816615]; symbol=AT2G20830; hit=AT2G20830; species=arabidopsis; confidence=medium |
| 产物 | folic acid binding / transferase [Source:NCBI gene (formerly Entrezgene);Acc:816615]; symbol=AT2G20830; hit=AT2G20830; species=arabidopsis; confidence=medium |
| Arabidopsis | AT2G20830 (AT2G20830)folic acid binding / transferase [Source:NCBI gene (formerly Entrezgene);Acc:816615] identity=56.3; qcov=0.594; evalue=9.68e-57; confidence=medium |
| Rice | Os03g0582000 (OJ1785_A05.10)- identity=45.9; qcov=0.59; evalue=3.99e-47; confidence=medium |
| GO | GO:0005542 (folic acid binding); GO:0016740 (transferase activity) |
| KEGG | - |
| Pfam | PF07837 (FTCD_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008198 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057791073.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057791073.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057791073.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057791073.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057791073.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:26190181 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B34,B8,D10 |
Chr2:26190193 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B118,B61 |
Chr2:26190200 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,C87 |
Chr2:26190204 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B14,B90,D4 |
Chr2:26190211 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B14,B90,D4 |
Chr2:26190221 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A13,B101,B104,B82,D11 |
Chr2:26190277 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C49,D10 |
Chr2:26190290 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A11,C15 |
Chr2:26190311 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C19,C64 |
Chr2:26190319 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:26190357 |
T |
TC |
1bp_insertion | frameshift_variant | 4 | B137,B14,C21,C7 |
Chr2:26190357 |
T |
TC |
1bp_insertion | CDS_variant | 4 | B137,B14,C21,C7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057791073.1PF07837
FTCD_N 65-132 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791073.1 |
Pfam | PF07837 |
FTCD_N | Domain | 65 | 132 | 4.3e-07 | 30.6 | Formiminotransferase domain, N-terminal subdomain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。