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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G001386

染色体: Chr02 坐标: 26358554-26363817 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G001386
名称SmilChr02G001386
描述G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向26358554 - 26363817 / -

ID 对照

NCBI Gene IDLOC131007624
GeneID131007624
locus_tag-
NCBI NameLOC131007624
原始查询SmilChr02G001386

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
产物G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
ArabidopsisAT4G27290 (AT4G27290)
S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837]
identity=52; qcov=0.949; evalue=0; confidence=high
RiceOs03g0556600
-
identity=44.7; qcov=1.06; evalue=0; confidence=medium
GOGO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen)
KEGG-
PfamPF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2); PF11883 (DUF3403)
InterPro-
eggNOG-
NRGeneID:131007624

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057790509.1
2 Nucleus 细胞核 0.00000 XP_057790509.1
3 Chromosome 染色体 0.00000 XP_057790509.1
4 Centromere 着丝粒 0.00000 XP_057790509.1
5 Chromatin 染色质 0.00000 XP_057790509.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:26359516 G A EMS_canonical_SNV CDS_variant 1 B113
Chr2:26359787 C T EMS_canonical_SNV CDS_variant 2 B98,C86
Chr2:26360291 G A EMS_canonical_SNV stop_gained 1 B117
Chr2:26360291 G A EMS_canonical_SNV CDS_variant 1 B117
Chr2:26360516 C T EMS_canonical_SNV CDS_variant 1 B72
Chr2:26361847 CA C 1bp_deletion frameshift_variant 1 B108
Chr2:26361847 CA C 1bp_deletion CDS_variant 1 B108
Chr2:26362074 C T EMS_canonical_SNV CDS_variant 1 B73
Chr2:26362082 C T EMS_canonical_SNV CDS_variant 1 C49
Chr2:26362138 C T EMS_canonical_SNV CDS_variant 1 C10
Chr2:26362160 AG A 1bp_deletion frameshift_variant 4 A22,B37,B6,C63
Chr2:26362160 AG A 1bp_deletion CDS_variant 4 A22,B37,B6,C63

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790509.1
868 aa
N
1
434
868
B_lectin
S_locus_glycop
PAN_2
Pkinase
PK_Tyr_Ser-Thr
DUF3403
C
PF01453 B_lectin 127-232 aa PF00954 S_locus_glycop 264-374 aa PF08276 PAN_2 395-461 aa PF00069 Pkinase 552-757 aa PF07714 PK_Tyr_Ser-Thr 553-819 aa PF11883 DUF3403 825-868 aa
XP_057790510.1
868 aa
N
1
434
868
B_lectin
S_locus_glycop
PAN_2
Pkinase
PK_Tyr_Ser-Thr
DUF3403
C
PF01453 B_lectin 127-232 aa PF00954 S_locus_glycop 264-374 aa PF08276 PAN_2 395-461 aa PF00069 Pkinase 552-757 aa PF07714 PK_Tyr_Ser-Thr 553-819 aa PF11883 DUF3403 825-868 aa
XP_057790511.1
868 aa
N
1
434
868
B_lectin
S_locus_glycop
PAN_2
Pkinase
PK_Tyr_Ser-Thr
DUF3403
C
PF01453 B_lectin 127-232 aa PF00954 S_locus_glycop 264-374 aa PF08276 PAN_2 395-461 aa PF00069 Pkinase 552-757 aa PF07714 PK_Tyr_Ser-Thr 553-819 aa PF11883 DUF3403 825-868 aa
XP_057790512.1
811 aa
N
1
406
811
B_lectin
S_locus_glycop
PAN_2
Pkinase
PK_Tyr_Ser-Thr
DUF3403
C
PF01453 B_lectin 70-175 aa PF00954 S_locus_glycop 207-317 aa PF08276 PAN_2 338-404 aa PF00069 Pkinase 495-700 aa PF07714 PK_Tyr_Ser-Thr 496-762 aa PF11883 DUF3403 768-811 aa
XP_057790513.1
735 aa
N
1
368
735
B_lectin
S_locus_glycop
PAN_2
Pkinase
PK_Tyr_Ser-Thr
DUF3403
C
PF01453 B_lectin 16-99 aa PF00954 S_locus_glycop 131-241 aa PF08276 PAN_2 262-328 aa PF00069 Pkinase 419-624 aa PF07714 PK_Tyr_Ser-Thr 420-686 aa PF11883 DUF3403 692-735 aa
XP_057790515.1
729 aa
N
1
364
729
B_lectin
S_locus_glycop
PAN_2
Pkinase
PK_Tyr_Ser-Thr
C
PF01453 B_lectin 127-232 aa PF00954 S_locus_glycop 264-374 aa PF08276 PAN_2 395-461 aa PF00069 Pkinase 552-706 aa PF07714 PK_Tyr_Ser-Thr 553-709 aa
XP_057790516.1
673 aa
N
1
336
673
S_locus_glycop
PAN_2
Pkinase
PK_Tyr_Ser-Thr
DUF3403
C
PF00954 S_locus_glycop 69-179 aa PF08276 PAN_2 200-266 aa PF00069 Pkinase 357-563 aa PF07714 PK_Tyr_Ser-Thr 358-624 aa PF11883 DUF3403 630-673 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057790509.1 Pfam PF01453 B_lectin Repeat 127 232 6.7e-38 130.1 D-mannose binding lectin
XP_057790509.1 Pfam PF00954 S_locus_glycop Domain 264 374 4.4e-31 108.4 S-locus glycoprotein domain
XP_057790509.1 Pfam PF08276 PAN_2 Domain 395 461 1.9e-22 79.8 PAN-like domain
XP_057790509.1 Pfam PF00069 Pkinase Domain 552 757 6.5e-43 147.7 Protein kinase domain
XP_057790509.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 553 819 1.1e-47 163.3 Protein tyrosine and serine/threonine kinase
XP_057790509.1 Pfam PF11883 DUF3403 Family 825 868 1.2e-09 38.8 Domain of unknown function (DUF3403)
XP_057790510.1 Pfam PF01453 B_lectin Repeat 127 232 6.7e-38 130.1 D-mannose binding lectin
XP_057790510.1 Pfam PF00954 S_locus_glycop Domain 264 374 4.4e-31 108.4 S-locus glycoprotein domain
XP_057790510.1 Pfam PF08276 PAN_2 Domain 395 461 1.9e-22 79.8 PAN-like domain
XP_057790510.1 Pfam PF00069 Pkinase Domain 552 757 6.5e-43 147.7 Protein kinase domain
XP_057790510.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 553 819 1.1e-47 163.3 Protein tyrosine and serine/threonine kinase
XP_057790510.1 Pfam PF11883 DUF3403 Family 825 868 1.2e-09 38.8 Domain of unknown function (DUF3403)
XP_057790511.1 Pfam PF01453 B_lectin Repeat 127 232 6.7e-38 130.1 D-mannose binding lectin
XP_057790511.1 Pfam PF00954 S_locus_glycop Domain 264 374 4.4e-31 108.4 S-locus glycoprotein domain
XP_057790511.1 Pfam PF08276 PAN_2 Domain 395 461 1.9e-22 79.8 PAN-like domain
XP_057790511.1 Pfam PF00069 Pkinase Domain 552 757 6.5e-43 147.7 Protein kinase domain
XP_057790511.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 553 819 1.1e-47 163.3 Protein tyrosine and serine/threonine kinase
XP_057790511.1 Pfam PF11883 DUF3403 Family 825 868 1.2e-09 38.8 Domain of unknown function (DUF3403)
XP_057790512.1 Pfam PF01453 B_lectin Repeat 70 175 5.9e-38 130.3 D-mannose binding lectin
XP_057790512.1 Pfam PF00954 S_locus_glycop Domain 207 317 4e-31 108.6 S-locus glycoprotein domain
XP_057790512.1 Pfam PF08276 PAN_2 Domain 338 404 1.7e-22 80.0 PAN-like domain
XP_057790512.1 Pfam PF00069 Pkinase Domain 495 700 5.7e-43 147.9 Protein kinase domain
XP_057790512.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 496 762 9.2e-48 163.5 Protein tyrosine and serine/threonine kinase
XP_057790512.1 Pfam PF11883 DUF3403 Family 768 811 1.1e-09 39.0 Domain of unknown function (DUF3403)
XP_057790513.1 Pfam PF01453 B_lectin Repeat 16 99 9.8e-27 94.2 D-mannose binding lectin
XP_057790513.1 Pfam PF00954 S_locus_glycop Domain 131 241 3.4e-31 108.8 S-locus glycoprotein domain
XP_057790513.1 Pfam PF08276 PAN_2 Domain 262 328 1.6e-22 80.1 PAN-like domain
XP_057790513.1 Pfam PF00069 Pkinase Domain 419 624 4.7e-43 148.2 Protein kinase domain
XP_057790513.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 420 686 7.2e-48 163.8 Protein tyrosine and serine/threonine kinase
XP_057790513.1 Pfam PF11883 DUF3403 Family 692 735 9.1e-10 39.2 Domain of unknown function (DUF3403)
XP_057790515.1 Pfam PF01453 B_lectin Repeat 127 232 5.3e-38 130.4 D-mannose binding lectin
XP_057790515.1 Pfam PF00954 S_locus_glycop Domain 264 374 3.4e-31 108.8 S-locus glycoprotein domain
XP_057790515.1 Pfam PF08276 PAN_2 Domain 395 461 1.5e-22 80.1 PAN-like domain
XP_057790515.1 Pfam PF00069 Pkinase Domain 552 706 6.3e-31 108.4 Protein kinase domain
XP_057790515.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 553 709 5.1e-34 118.5 Protein tyrosine and serine/threonine kinase
XP_057790516.1 Pfam PF00954 S_locus_glycop Domain 69 179 3e-31 109.0 S-locus glycoprotein domain
XP_057790516.1 Pfam PF08276 PAN_2 Domain 200 266 1.4e-22 80.2 PAN-like domain
XP_057790516.1 Pfam PF00069 Pkinase Domain 357 563 3.9e-43 148.5 Protein kinase domain
XP_057790516.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 358 624 5.8e-48 164.2 Protein tyrosine and serine/threonine kinase
XP_057790516.1 Pfam PF11883 DUF3403 Family 630 673 7.9e-10 39.4 Domain of unknown function (DUF3403)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA
XM_057934526.1
ATTGTAATTCACTGATTTGATTTTTCTTACTTAGGTATTTTACAGACAGGAGTTGATTGGAAATAAAATAAAGGAAGTTACCATGAGTTTTAATTGTAAAGACCATAGCATGAAAGCAAGATCTAACTGTAAGTAATTGCATAATTTCGATACAGGTGTCATGTTGGACTAACATAAAAAGGTCGCTTTCTCACTCTGGGAATAATAAGTGTCTAAAATATTGTTCTTTTCTTGAATTATGCAGAAGTTGATTTGTATTG...
XM_057934527.1
GTATCGAAGAACCCACATTGTAATTCACTGATTTGATTTTTCTTACTTAGGTATTTTACAGACAGGAGTTGATTGGAAATAAAATAAAGGAAGTTACCATGAGTTTTAATTGTAAAGACCATAGCATGAAAGCAAGATCTAACTAAGTTGATTTGTATTGGACTTCTTCACTCAGACTGGAATTCTAAACCACTTAGGCAACCTTTGATAAAATGGGCCACTAAATGTCAACATCATCTTCTAAATGGTTATATATTTGT...

CDS

7 records

下载 CDS FASTA
LOC131007624
ATGTCAACATCATCTTCTAAATGGTTATATATTTTTTGTTCGTGGTTAAAAGCATCTGCTCTCACTGATGGTATGACAGCATTGCAATCTCTTAAAGATGGTGAGACGCTGATTTCAAATGGAGGAAATTTCGAGCTGGGGTTTTTCAGTCCAGGTCGTTCCAAGGGCAGGTACTTGGGTATTTGGTACAAGAATATTCCTGTTAGAACTGTTGTTTGGGTTGCAAATAGGCGAAACCCCATCAAAGATTCATCTGGCTT...
LOC131007624
ATGTCAACATCATCTTCTAAATGGTTATATATTTGTGAGTTGTTTGAGTCACTTCTTCTCTGTTCCAAGGTCTATCATTTATGTGTCCTTGTAGACCTTCAAATGATACTTGCACTCGGACCCCTCAAATTCTCAGCAGATTGGGAATACGAAAATTTCGGATTCCATAATAATCTTTTGCCTTTGTATCTTTGTCTGTGTGTAGTTTGTTCGTGGTTAAAAGCATCTGCTCTCACTGATGGTATGACAGCATTGCAATC...

Protein

7 records

下载 Protein FASTA
XP_057790509.1
MSTSSSKWLYICELFESLLLCSKVYHLCVLVDLQMILALGPLKFSADWEYENFGFHNNLLPLYLCLCVVCSWLKASALTDGMTALQSLKDGETLISNGGNFELGFFSPGRSKGRYLGIWYKNIPVRTVVWVANRRNPIKDSSGLLVVNNTGSLVLSNGSSSVVWSTSSARMAQDPLLQLLDLGNLVIRDIRDNNADNYLWQSFDYPSDTLLPGMKLGWDLRTRLNRRITSWRSSDDPAPGELSSGVELDAYPQLMMYRGT...
XP_057790510.1
MSTSSSKWLYICELFESLLLCSKVYHLCVLVDLQMILALGPLKFSADWEYENFGFHNNLLPLYLCLCVVCSWLKASALTDGMTALQSLKDGETLISNGGNFELGFFSPGRSKGRYLGIWYKNIPVRTVVWVANRRNPIKDSSGLLVVNNTGSLVLSNGSSSVVWSTSSARMAQDPLLQLLDLGNLVIRDIRDNNADNYLWQSFDYPSDTLLPGMKLGWDLRTRLNRRITSWRSSDDPAPGELSSGVELDAYPQLMMYRGT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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