当前解析结果
SmilChr02G001392| 统一新 Gene ID | SmilChr02G001392 |
|---|---|
| 名称 | SmilChr02G001392 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 26442907 - 26446629 / - |
| NCBI Gene ID | LOC131007627 |
|---|---|
| GeneID | 131007627 |
| locus_tag | - |
| NCBI Name | LOC131007627 |
| 原始查询 | SmilChr02G001392 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| Arabidopsis | AT4G27290 (AT4G27290)S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837] identity=49.2; qcov=1.04; evalue=0; confidence=high |
| Rice | Os01g0784700- identity=46.4; qcov=1.02; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2); PF11883 (DUF3403) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007627 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057790518.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057790518.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057790518.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057790518.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057790518.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:26443255 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A13,B107,B54,C15,C85 |
Chr2:26443498 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B19 |
Chr2:26443594 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr2:26444213 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:26444260 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B100,B77 |
Chr2:26444330 |
TTG |
T |
2bp_deletion | frameshift_variant | 1 | B69 |
Chr2:26444330 |
TTG |
T |
2bp_deletion | CDS_variant | 1 | B69 |
Chr2:26444801 |
TGA |
T |
2bp_deletion | frameshift_variant | 2 | B107,D3 |
Chr2:26444801 |
TGA |
T |
2bp_deletion | CDS_variant | 2 | B107,D3 |
Chr2:26444804 |
T |
TCA |
2bp_insertion | frameshift_variant | 2 | B107,D3 |
Chr2:26444804 |
T |
TCA |
2bp_insertion | CDS_variant | 2 | B107,D3 |
Chr2:26445102 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790518.1PF01453
B_lectin 76-180 aa
PF00954
S_locus_glycop 212-320 aa
PF08276
PAN_2 342-408 aa
PF00069
Pkinase 502-765 aa
PF07714
PK_Tyr_Ser-Thr 502-768 aa
PF11883
DUF3403 772-817 aa
XP_057790519.1PF01453
B_lectin 93-157 aa
PF00954
S_locus_glycop 189-297 aa
PF08276
PAN_2 319-385 aa
PF00069
Pkinase 479-742 aa
PF07714
PK_Tyr_Ser-Thr 479-745 aa
PF11883
DUF3403 749-794 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790518.1 |
Pfam | PF01453 |
B_lectin | Repeat | 76 | 180 | 9.6e-36 | 123.1 | D-mannose binding lectin |
XP_057790518.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 212 | 320 | 2.5e-28 | 99.5 | S-locus glycoprotein domain |
XP_057790518.1 |
Pfam | PF08276 |
PAN_2 | Domain | 342 | 408 | 9.4e-19 | 68.0 | PAN-like domain |
XP_057790518.1 |
Pfam | PF00069 |
Pkinase | Domain | 502 | 765 | 2.5e-43 | 149.1 | Protein kinase domain |
XP_057790518.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 502 | 768 | 2.2e-47 | 162.3 | Protein tyrosine and serine/threonine kinase |
XP_057790518.1 |
Pfam | PF11883 |
DUF3403 | Family | 772 | 817 | 1.6e-07 | 32.0 | Domain of unknown function (DUF3403) |
XP_057790519.1 |
Pfam | PF01453 |
B_lectin | Repeat | 93 | 157 | 7.9e-24 | 84.8 | D-mannose binding lectin |
XP_057790519.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 189 | 297 | 2.4e-28 | 99.6 | S-locus glycoprotein domain |
XP_057790519.1 |
Pfam | PF08276 |
PAN_2 | Domain | 319 | 385 | 9.1e-19 | 68.1 | PAN-like domain |
XP_057790519.1 |
Pfam | PF00069 |
Pkinase | Domain | 479 | 742 | 2.4e-43 | 149.2 | Protein kinase domain |
XP_057790519.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 479 | 745 | 2.1e-47 | 162.4 | Protein tyrosine and serine/threonine kinase |
XP_057790519.1 |
Pfam | PF11883 |
DUF3403 | Family | 749 | 794 | 1.5e-07 | 32.1 | Domain of unknown function (DUF3403) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。